Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 3.2e-270 934.5 467 100.0
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 2.0e-227 792.3 469 84.2
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.2e-187 660.2 455 73.2
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.0e-187 659.4 467 71.1
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 9.8e-187 657.1 469 71.2
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.7e-183 646.4 455 70.3
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 3.3e-182 642.1 469 69.9
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 5.6e-182 641.3 455 70.8
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 5.2e-180 634.8 470 71.1
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 4.9e-178 628.2 466 69.7
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.1e-177 627.1 470 68.1
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.2e-177 625.5 470 67.9
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.7e-175 619.8 469 67.8
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 2.5e-174 615.9 490 67.1
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 6.4e-170 601.3 469 67.2
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.3e-167 593.6 453 67.5
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.9e-166 589.7 437 68.9
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 2.3e-159 566.2 427 66.7
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 1.1e-158 563.9 475 62.5
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 1.6e-157 560.1 476 63.7
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.1e-156 557.4 465 63.2
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 2.6e-155 552.7 456 65.6
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.7e-154 550.1 468 63.0
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.2e-153 545.4 438 64.8
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 6.2e-149 531.6 472 60.0
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 8.1e-149 531.2 472 60.4
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 3.1e-148 529.3 433 65.4
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.5e-147 526.9 471 60.7
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 2.6e-147 526.2 380 73.2
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 4.5e-147 525.4 476 60.9
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.7e-146 523.5 481 59.3
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 2.2e-146 523.1 478 60.7
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 3.2e-145 519.2 486 59.1
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 4.2e-145 518.8 478 61.7
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.1e-144 516.5 399 66.4
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.7e-144 516.2 399 66.2
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.8e-143 513.5 399 65.9
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.8e-143 513.5 480 59.2
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 2.3e-143 513.1 496 58.3
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 5.1e-143 511.9 472 59.3
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 5.1e-143 511.9 475 59.2
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.9e-142 510.0 476 60.7
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 2.5e-142 509.6 467 60.6
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 5.7e-142 508.4 473 58.1
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.3e-141 507.3 482 59.1
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 1.6e-141 506.9 476 60.3
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.6e-141 506.9 476 60.7
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.6e-141 506.9 461 60.5
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.8e-141 506.1 476 60.5
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 4.8e-141 505.4 505 56.6
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.1e-140 504.2 507 56.2
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.4e-140 503.8 434 60.8
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.8e-140 503.4 476 60.5
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 2.2e-138 496.5 480 56.2
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 9.3e-137 491.1 468 58.5
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.6e-136 490.3 482 55.8
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 6.1e-136 488.4 489 56.4
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.0e-135 487.6 433 60.5
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.0e-135 487.6 467 57.6
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 1.8e-135 486.9 472 57.2
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 1.8e-135 486.9 494 55.5
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.8e-132 476.9 481 55.3
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 2.4e-132 476.5 466 57.1
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 3.1e-132 476.1 472 56.4
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 2.0e-131 473.4 460 57.6
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.0e-130 471.1 461 57.0
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 3.8e-130 469.2 463 53.8
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 5.5e-129 465.3 490 56.7
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.2e-128 464.2 486 54.7
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 3.9e-127 459.1 441 58.3
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.5e-126 457.2 401 58.6
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 9.7e-126 454.5 471 55.0
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 9.7e-126 454.5 475 51.6
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.3e-125 454.1 395 60.3
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 2.8e-125 453.0 482 53.5
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 3.1e-124 449.5 465 54.6
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 9.1e-124 448.0 478 52.3
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 6.5e-122 441.8 402 58.2
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 8.5e-122 441.4 453 53.0
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 8.5e-122 441.4 470 54.3
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.1e-121 441.0 482 51.7
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 4.2e-121 439.1 431 55.7
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.2e-120 437.6 469 51.8
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.8e-119 433.7 486 52.3
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 1.1e-118 431.0 405 57.3
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.6e-118 429.9 470 51.5
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 4.4e-118 429.1 474 52.7
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 4.4e-118 429.1 491 51.5
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 1.3e-117 427.6 483 52.2
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 5.3e-116 422.2 468 52.8
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 7.0e-116 421.8 351 63.5
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 4.5e-115 419.1 447 53.7
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.1e-113 414.5 391 56.8
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 9.4e-113 411.4 461 52.5
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.8e-109 399.8 397 53.7
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 4.8e-109 399.1 411 53.5
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 3.1e-108 396.4 464 50.6
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.2e-105 386.3 478 48.3
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.6e-104 384.0 483 49.9
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.7e-104 383.3 434 49.1
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.3e-101 374.4 388 56.2
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.7e-101 374.0 497 44.3
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.8e-100 370.5 493 44.8
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 5.4e-100 369.0 401 51.4
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 2.9e-98 363.2 495 46.1
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 3.2e-97 359.8 474 45.8
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 7.2e-97 358.6 496 45.8
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 6.8e-95 352.1 419 51.3
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 2.0e-94 350.5 492 43.1
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 5.7e-94 349.0 492 44.9
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 1.1e-92 344.7 491 44.2
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.1e-92 342.8 291 60.1
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 5.0e-90 335.9 463 45.4
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 9.5e-89 331.6 492 43.5
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 1.2e-88 331.3 492 43.5
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.0e-87 328.2 460 43.3
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 6.8e-87 325.5 233 67.4
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 8.9e-87 325.1 200 79.0
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 4.4e-86 322.8 204 78.9
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 2.7e-83 313.5 488 42.2
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.1e-81 308.1 456 42.5
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.6e-75 287.7 456 39.3
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.7e-75 287.0 456 39.3
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 7.8e-75 285.4 361 44.3
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.3e-74 284.6 390 39.7
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.2e-72 278.1 389 41.9
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.0e-70 270.8 514 36.0
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 7.1e-68 262.3 199 62.8
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 2.3e-66 257.3 434 38.2
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.5e-62 244.6 408 39.7
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.4e-60 238.0 491 36.7
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.2e-59 235.0 169 68.0
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.3e-58 230.7 494 35.4
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.8e-55 221.1 406 39.2
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 2.4e-55 220.7 412 34.7
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 8.9e-55 218.8 376 39.1
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 9.9e-54 215.3 444 34.9
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-51 208.4 168 65.5
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-51 208.4 168 65.5
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.1e-50 203.0 388 37.1
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 9.3e-44 182.2 168 54.8
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 9.3e-44 182.2 436 31.9
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.6e-43 181.4 333 41.4
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.1e-43 181.0 164 53.0
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 4.6e-43 179.9 164 54.3
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 2.3e-42 177.6 108 76.9
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 8.1e-40 169.1 308 39.9
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 8.1e-40 169.1 262 42.7
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.2e-38 165.2 330 37.9
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.9e-36 157.9 391 33.0
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 7.1e-36 156.0 160 45.0
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.6e-35 154.8 149 52.3
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 3.5e-19 100.5 108 53.7
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 6.7e-18 96.3 261 31.8
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 3.6e-11 73.9 119 37.8


User provided reference genes

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