Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 3.0e-145 518.5 253 100.0
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.2e-117 426.8 248 82.7
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 2.1e-106 389.4 255 76.5
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 6.0e-106 387.9 250 77.2
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.9e-105 385.2 250 74.8
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.5e-104 382.5 255 73.3
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.3e-103 380.2 255 72.2
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.1e-103 379.4 255 72.2
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.1e-102 377.1 255 73.7
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 2.9e-100 369.0 255 71.4
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.5e-100 367.9 254 69.7
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 9.3e-99 364.0 241 74.7
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.6e-98 363.2 254 72.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.0e-97 359.0 239 73.2
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.9e-97 358.6 254 69.7
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.9e-97 358.6 253 71.5
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 5.1e-97 358.2 255 70.2
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 8.7e-97 357.5 255 69.8
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.5e-96 355.9 254 68.9
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.5e-96 355.9 253 70.4
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.3e-95 353.6 253 67.2
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.6e-95 353.2 257 66.9
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.6e-95 353.2 256 68.4
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 4.8e-95 351.7 254 68.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.4e-94 350.1 257 70.8
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.4e-94 350.1 257 70.8
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.8e-94 349.7 257 71.6
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.0e-93 346.3 257 70.0
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 2.6e-93 345.9 252 67.1
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 2.6e-93 345.9 255 66.3
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.4e-93 345.5 240 67.9
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.0e-92 344.0 252 65.1
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.2e-92 342.8 254 66.1
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.2e-92 342.8 255 69.0
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 2.2e-92 342.8 255 65.9
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.9e-91 339.7 253 65.2
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.5e-91 339.3 252 67.9
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.5e-91 339.3 255 66.7
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.5e-91 339.3 252 68.3
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.2e-91 339.0 252 67.9
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 3.2e-91 339.0 245 68.6
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.2e-91 338.6 174 89.1
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 7.2e-91 337.8 254 64.2
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 1.2e-90 337.0 258 65.1
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.6e-90 336.7 254 63.8
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 3.6e-90 335.5 252 65.9
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 3.6e-90 335.5 252 66.3
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.6e-90 335.5 245 66.1
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 4.6e-90 335.1 249 66.7
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.0e-89 334.0 252 65.1
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 2.3e-89 332.8 254 66.1
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 2.3e-89 332.8 254 64.2
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.9e-89 332.0 252 65.5
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.9e-89 332.0 256 64.1
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 5.1e-89 331.6 255 63.5
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.7e-89 331.3 255 64.7
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.1e-88 330.5 256 64.1
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.1e-88 330.5 257 63.8
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.9e-88 329.7 249 65.9
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.9e-88 329.7 251 65.7
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.9e-88 329.7 257 64.6
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.9e-88 329.7 180 82.8
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.5e-88 329.3 255 63.9
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 4.3e-88 328.6 257 63.4
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 9.7e-88 327.4 256 62.9
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.3e-87 327.0 262 64.5
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 8.2e-87 324.3 257 63.0
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.1e-86 323.9 253 64.8
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.4e-86 323.6 255 64.3
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.8e-86 323.2 252 63.5
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.4e-86 322.8 255 65.1
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.4e-86 322.8 255 62.0
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.1e-86 322.4 256 61.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 9.1e-86 320.9 266 62.4
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.2e-85 320.5 253 62.1
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.2e-85 320.5 288 59.0
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.6e-85 319.3 261 62.1
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 2.6e-85 319.3 257 61.5
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 7.7e-85 317.8 251 63.3
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 2.2e-84 316.2 259 62.5
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 2.2e-84 316.2 257 65.0
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 2.9e-84 315.8 255 60.8
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.9e-84 315.8 247 64.8
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 6.5e-84 314.7 258 63.6
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.4e-83 313.5 250 62.4
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.9e-83 313.2 254 62.6
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 4.2e-83 312.0 258 61.2
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 4.2e-83 312.0 253 60.5
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.1e-82 309.7 176 80.1
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 2.7e-82 309.3 257 61.5
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 2.7e-82 309.3 246 62.6
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 3.6e-82 308.9 255 61.2
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 4.6e-82 308.5 250 62.4
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.6e-82 308.5 253 62.8
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.6e-82 308.5 253 62.8
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 7.9e-82 307.8 263 58.9
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 6.7e-81 304.7 217 71.4
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 8.8e-81 304.3 263 60.1
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.1e-80 303.9 245 62.9
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.1e-80 303.9 217 71.0
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.5e-80 303.5 251 60.6
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.6e-80 302.8 254 61.4
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 5.7e-80 301.6 252 56.7
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 7.4e-80 301.2 251 62.2
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 4.8e-79 298.5 253 58.5
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.8e-78 296.6 251 59.0
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 2.4e-78 296.2 255 57.6
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 4.1e-78 295.4 244 61.5
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 4.1e-78 295.4 244 61.5
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 6.9e-78 294.7 257 58.4
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.5e-77 293.5 219 65.8
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.5e-77 293.5 176 77.3
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.9e-77 291.6 258 60.1
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 7.7e-77 291.2 232 64.7
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.3e-76 290.4 251 58.6
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.9e-76 289.3 258 57.8
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 5.0e-76 288.5 246 59.8
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.1e-75 287.3 221 64.3
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.9e-75 286.6 255 58.4
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 7.2e-75 284.6 252 57.1
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 2.1e-74 283.1 249 59.4
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.0e-73 280.8 251 55.4
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-72 276.9 147 87.1
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 9.7e-72 274.2 249 55.0
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 2.2e-71 273.1 164 79.9
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 2.8e-71 272.7 255 58.4
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.2e-69 267.3 254 56.3
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 3.8e-68 262.3 215 59.1
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-65 254.2 179 65.9
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.3e-64 249.2 252 53.2
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 6.3e-63 245.0 138 79.7
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.8e-62 243.4 218 56.0
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.1e-62 242.7 267 49.8
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.9e-59 233.4 149 74.5
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 3.2e-59 232.6 229 52.8
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.6e-58 230.3 164 63.4
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.3e-55 220.7 164 62.2
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.7e-55 220.3 172 59.9
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.7e-55 220.3 167 59.9
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.4e-54 217.2 255 46.7
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 3.1e-54 216.1 144 68.8
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.7e-52 210.3 167 57.5
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.9e-52 209.5 111 84.7
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.1e-51 207.6 254 47.2
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.3e-39 164.9 212 46.7
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 7.8e-37 158.3 143 58.0
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 3.3e-35 152.9 94 73.4
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.1e-33 146.4 84 81.0
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.3e-31 141.0 111 62.2
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.7e-28 130.6 141 50.4
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 3.9e-28 129.4 213 32.9
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.1e-27 127.9 82 65.9
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 4.3e-27 125.9 63 92.1
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.8e-26 123.2 73 76.7
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 2.2e-23 113.6 78 69.2
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 1.1e-22 111.3 142 42.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.1e-21 107.1 62 75.8
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-18 97.8 65 66.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.9e-14 84.0 81 49.4
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 5.4e-14 82.4 48 75.0
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.5e-13 79.7 39 84.6
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.5e-13 79.7 51 68.6
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 5.1e-12 75.9 101 43.6
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.3e-11 73.2 51 64.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.3e-11 73.2 51 64.7
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 5.2e-09 65.9 35 80.0
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-08 63.9 43 67.4


User provided reference genes

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