Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 3.6e-148 528.5 316 100.0
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 1.6e-103 380.2 315 71.4
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 8.3e-97 357.8 324 67.9
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.3e-94 350.5 323 66.6
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 5.6e-93 345.1 323 65.6
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 4.7e-92 342.0 319 69.0
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 1.4e-88 330.5 322 64.6
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.2e-87 327.4 324 62.0
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 3.5e-87 325.9 327 62.1
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 3.5e-87 325.9 327 62.1
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 1.3e-86 323.9 343 60.6
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 8.7e-86 321.2 328 64.9
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 1.3e-84 317.4 287 65.2
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 6.2e-84 315.1 320 60.6
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.1e-83 314.3 290 64.8
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.8e-83 313.5 291 66.0
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.6e-82 309.7 291 63.9
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 4.4e-82 308.9 320 58.8
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 7.6e-82 308.1 322 59.6
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 2.9e-81 306.2 291 63.6
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 3.8e-81 305.8 323 58.8
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 9.3e-80 301.2 294 63.9
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.5e-77 293.9 317 57.4
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 4.3e-77 292.4 314 57.0
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.1e-75 286.2 320 56.9
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.1e-75 286.2 323 58.2
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 5.3e-75 285.4 315 58.1
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.3e-75 285.4 323 57.9
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 9.0e-75 284.6 323 58.5
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.5e-74 283.9 274 70.8
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 5.8e-74 282.0 317 56.2
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 8.4e-73 278.1 272 59.2
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.9e-72 276.9 342 53.2
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 7.1e-72 275.0 313 54.6
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 2.1e-71 273.5 307 61.2
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.3e-70 270.0 318 57.9
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 5.1e-70 268.9 321 55.8
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 5.1e-70 268.9 281 59.1
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 5.6e-69 265.4 338 52.7
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 9.6e-69 264.6 299 59.9
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.6e-68 263.8 309 55.3
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 2.8e-68 263.1 284 58.1
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 6.2e-68 261.9 307 55.0
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 2.4e-67 260.0 318 53.8
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 9.0e-67 258.1 326 54.0
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.5e-66 257.3 304 53.3
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.6e-66 256.5 308 54.2
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.1e-64 251.1 286 61.9
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 4.2e-64 249.2 283 56.5
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 7.1e-64 248.4 335 51.6
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 6.0e-63 245.4 296 53.7
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 1.1e-61 241.1 320 52.2
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.5e-61 240.7 274 55.8
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 7.4e-61 238.4 275 57.5
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 1.6e-60 237.3 273 54.9
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.1e-60 236.9 275 59.6
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.8e-60 236.5 275 57.1
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 4.8e-60 235.7 320 50.0
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 1.4e-59 234.2 305 49.5
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.8e-59 233.8 285 53.0
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 5.3e-59 232.3 322 51.6
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 3.4e-58 229.6 309 57.9
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 1.7e-57 227.3 290 60.0
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 4.2e-56 222.6 297 54.9
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 9.3e-56 221.5 278 51.8
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 9.3e-56 221.5 316 48.7
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.6e-55 220.7 283 57.2
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.1e-55 220.3 283 57.2
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 6.1e-55 218.8 308 52.6
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 3.9e-54 216.1 268 51.9
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 8.7e-54 214.9 347 45.2
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.1e-53 214.5 254 54.7
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.3e-53 213.0 308 49.0
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 3.3e-53 213.0 297 56.9
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 5.7e-53 212.2 295 50.8
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 7.4e-53 211.8 301 50.5
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 9.7e-53 211.5 327 51.7
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 1.3e-52 211.1 281 49.8
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.4e-51 206.8 293 50.2
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 5.3e-51 205.7 301 52.5
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 1.5e-50 204.1 294 54.8
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 5.9e-50 202.2 312 45.5
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 5.9e-50 202.2 328 46.0
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.1e-48 198.0 338 44.4
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.2e-48 196.4 279 49.8
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 7.2e-48 195.3 328 44.8
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 9.4e-48 194.9 345 41.7
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 2.3e-46 190.3 122 84.4
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.5e-45 187.6 289 53.3
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 2.0e-45 187.2 344 45.9
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 2.8e-44 183.3 256 53.1
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 2.8e-44 183.3 329 48.0
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 6.3e-44 182.2 294 46.6
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 6.3e-44 182.2 240 48.8
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 8.2e-44 181.8 303 52.8
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 4.1e-43 179.5 239 47.7
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 5.3e-43 179.1 276 51.4
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 5.3e-43 179.1 319 48.0
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.9e-43 178.7 281 45.2
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.5e-42 177.6 293 50.9
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.0e-42 177.2 280 46.8
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 2.0e-42 177.2 288 45.8
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 4.5e-42 176.0 323 40.6
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 5.9e-42 175.6 157 65.6
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 5.9e-42 175.6 291 52.2
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 7.7e-42 175.3 296 47.3
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.0e-41 174.9 293 47.4
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 2.9e-41 173.3 287 45.6
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.9e-40 170.6 288 43.4
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 2.5e-40 170.2 218 60.1
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 9.4e-40 168.3 326 43.6
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 4.7e-39 166.0 330 43.6
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 4.7e-39 166.0 304 42.1
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 1.0e-38 164.9 284 44.4
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-38 164.5 379 38.5
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.4e-38 164.5 222 59.0
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.8e-38 164.1 277 52.7
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 3.0e-38 163.3 321 44.5
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 3.0e-38 163.3 331 43.2
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 3.0e-38 163.3 331 43.2
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.9e-38 162.9 280 43.6
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 5.1e-38 162.5 330 43.9
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 7.4e-37 158.7 314 46.5
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.7e-36 156.4 296 43.6
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 4.8e-36 156.0 218 56.4
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 1.1e-35 154.8 280 42.5
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.1e-35 154.8 293 50.9
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 3.1e-35 153.3 330 42.1
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 7.0e-35 152.1 328 41.2
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 7.0e-35 152.1 330 41.8
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 7.0e-35 152.1 330 41.8
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.5e-34 151.0 323 43.3
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 3.5e-34 149.8 290 41.0
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 1.0e-33 148.3 330 40.9
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 4.2e-32 142.9 257 40.5
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 4.2e-32 142.9 257 40.5
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 3.0e-30 136.7 237 43.5
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 4.0e-30 136.3 164 54.3
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 6.7e-30 135.6 298 42.6
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 6.7e-30 135.6 284 38.7
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 6.7e-30 135.6 325 34.8
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 1.5e-29 134.4 332 39.5
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 2.0e-29 134.0 289 40.5
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.7e-28 129.8 325 36.3
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 5.3e-27 125.9 209 41.6
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 5.9e-26 122.5 107 64.5
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.0e-25 121.7 233 42.1
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.1e-23 114.0 316 37.3
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.2e-21 108.2 294 34.0
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 7.5e-21 105.5 279 36.6
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 8.3e-20 102.1 128 51.6
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-19 101.7 102 62.7
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.1e-16 91.7 143 48.3
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 7.2e-16 89.0 310 41.0
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 1.4e-14 84.7 66 71.2
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 8.8e-14 82.0 275 31.3
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.5e-13 81.3 294 29.9
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 3.4e-13 80.1 272 31.2
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 6.3e-12 75.9 159 40.3
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 9.1e-11 72.0 89 49.4
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 4.2e-08 63.2 78 57.7
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 1.6e-07 61.2 355 25.1
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 2.1e-07 60.8 359 27.6
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 2.1e-07 60.8 307 25.1
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 3.6e-07 60.1 339 26.8
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 1.4e-06 58.2 289 30.4
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 3.0e-06 57.0 118 39.0
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 3.0e-06 57.0 307 27.7
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 4.0e-06 56.6 293 29.4
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 4.0e-06 56.6 78 51.3
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 5.2e-06 56.2 318 31.4
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 8.9e-06 55.5 70 55.7


User provided reference genes

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