Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 2.2e-157 558.9 287 100.0
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 3.1e-122 442.2 291 82.5
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.6e-107 393.3 276 75.0
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 6.8e-106 387.9 288 71.5
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 6.8e-106 387.9 288 71.5
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 4.4e-105 385.2 286 74.8
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 8.4e-104 380.9 278 73.0
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 9.2e-103 377.5 289 69.9
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 6.0e-102 374.8 280 72.9
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 3.9e-101 372.1 292 70.2
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 5.1e-101 371.7 273 71.1
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 1.1e-100 370.5 289 69.6
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 2.5e-100 369.4 274 71.9
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 3.3e-100 369.0 269 73.6
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 5.6e-100 368.2 265 72.8
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.1e-98 364.0 280 71.1
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.8e-98 363.2 292 68.2
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 2.4e-98 362.8 291 68.4
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 2.4e-98 362.8 288 68.1
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 4.0e-98 362.1 293 67.2
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 6.9e-98 361.3 285 68.1
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 9.0e-98 360.9 295 68.1
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 2.0e-97 359.8 253 75.9
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 3.4e-97 359.0 288 68.8
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.7e-96 356.7 249 75.9
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 3.8e-96 355.5 285 67.7
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 4.9e-96 355.1 293 67.2
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 4.9e-96 355.1 267 73.0
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 8.4e-96 354.4 277 67.9
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.2e-95 352.4 288 68.8
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 5.4e-95 351.7 237 77.2
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.2e-94 350.5 269 69.9
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 3.0e-93 345.9 258 70.2
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 3.9e-93 345.5 280 68.9
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 1.5e-92 343.6 278 68.0
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 3.3e-92 342.4 295 65.4
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 3.3e-92 342.4 289 66.1
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 4.3e-92 342.0 258 69.8
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 1.3e-91 340.5 296 64.5
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 3.6e-91 339.0 248 69.8
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 4.8e-91 338.6 284 65.5
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 4.8e-91 338.6 263 66.2
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 6.2e-91 338.2 247 70.9
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 8.1e-91 337.8 216 77.8
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 8.1e-91 337.8 297 64.3
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 8.1e-91 337.8 273 66.3
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 1.1e-90 337.4 294 64.6
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.8e-90 336.7 275 65.1
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 4.0e-90 335.5 241 71.8
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 4.0e-90 335.5 282 65.2
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 6.9e-90 334.7 296 60.8
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 6.9e-90 334.7 247 69.6
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 2.6e-89 332.8 286 62.9
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 7.6e-89 331.3 262 65.3
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 2.9e-88 329.3 249 68.3
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 4.9e-88 328.6 286 63.3
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 8.4e-88 327.8 284 62.3
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 1.9e-87 326.6 234 70.9
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.9e-87 326.6 292 61.6
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 1.9e-87 326.6 249 67.9
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 4.2e-87 325.5 283 61.5
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 1.2e-86 323.9 284 62.7
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 1.2e-86 323.9 280 61.4
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.6e-86 323.6 363 54.0
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 1.6e-86 323.6 285 61.8
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 2.1e-86 323.2 314 58.9
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 4.6e-86 322.0 239 67.4
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 6.0e-86 321.6 281 61.6
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 2.3e-85 319.7 250 67.2
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 6.7e-85 318.2 263 64.3
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 8.7e-85 317.8 294 58.8
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.5e-84 317.0 273 61.5
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 3.3e-84 315.8 277 61.0
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 1.4e-82 310.5 243 65.4
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 1.8e-82 310.1 216 72.2
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 2.4e-82 309.7 243 65.4
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 3.1e-82 309.3 281 60.1
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 3.1e-82 309.3 262 64.9
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 6.9e-82 308.1 243 65.0
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 9.0e-82 307.8 243 65.4
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 1.5e-81 307.0 285 56.5
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 2.6e-81 306.2 278 62.6
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 7.6e-81 304.7 263 61.6
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 1.7e-80 303.5 235 63.8
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 2.2e-80 303.1 279 60.9
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 3.8e-80 302.4 245 64.9
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 1.4e-79 300.4 235 63.8
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 1.4e-79 300.4 293 57.0
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 5.5e-79 298.5 244 63.1
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 4.6e-78 295.4 228 65.4
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 6.0e-78 295.0 326 52.8
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 7.9e-78 294.7 285 60.4
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 2.5e-76 289.7 232 65.1
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 2.1e-75 286.6 396 44.2
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 2.0e-73 280.0 316 52.5
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 3.5e-70 269.2 216 66.7
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 6.0e-70 268.5 185 74.6
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 3.9e-69 265.8 215 61.4
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 8.7e-69 264.6 190 70.0
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.5e-65 253.8 248 57.3
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 2.9e-64 249.6 212 59.4
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 2.5e-63 246.5 266 50.0
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 7.9e-62 241.5 244 51.2
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 1.0e-61 241.1 234 51.7
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 8.8e-61 238.0 242 54.5
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 3.4e-57 226.1 260 47.7
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 4.5e-57 225.7 296 47.6
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 1.3e-56 224.2 181 63.5
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 1.2e-54 217.6 201 63.2
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 8.8e-53 211.5 287 47.7
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 2.6e-49 199.9 263 45.6
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 5.9e-49 198.7 277 40.4
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.0e-48 198.0 194 57.2
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.9e-48 196.4 201 55.7
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 3.0e-45 186.4 139 71.2
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 4.8e-43 179.1 258 43.0
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 6.5e-40 168.7 239 41.4
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 2.7e-38 163.3 129 62.8
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 1.0e-37 161.4 115 68.7
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 2.6e-28 130.2 184 42.4
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 1.3e-27 127.9 159 46.5
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 1.0e-21 108.2 72 65.3
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 3.1e-13 80.1 64 59.4


User provided reference genes

Program Settings