Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.6e-127 458.8 235 100.0
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 3.9e-91 338.6 240 73.8
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.8e-88 329.7 241 71.8
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.2e-87 327.0 241 70.5
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.0e-87 326.2 243 69.1
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.7e-86 323.2 240 70.8
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.2e-86 322.8 245 69.0
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.8e-86 322.0 225 77.8
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.2e-85 318.9 241 68.0
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.2e-85 318.9 241 68.0
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 7.1e-85 317.8 244 67.2
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 3.5e-84 315.5 243 68.7
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 4.6e-84 315.1 240 70.0
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.8e-83 313.2 242 68.2
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.8e-83 313.2 241 71.0
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.8e-83 313.2 243 68.3
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.3e-83 312.8 241 66.8
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.9e-83 312.0 244 66.4
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.5e-82 310.1 247 67.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 3.3e-82 308.9 242 66.9
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.3e-82 308.9 245 66.9
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 4.8e-81 305.1 250 66.8
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 6.2e-81 304.7 243 67.5
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.0e-80 302.0 244 64.3
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 5.3e-80 301.6 236 65.3
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.2e-79 300.4 249 62.7
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-79 300.4 240 68.8
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.6e-79 299.3 243 65.8
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 2.6e-79 299.3 247 62.3
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.7e-78 296.6 241 63.1
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 3.8e-78 295.4 221 74.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 3.8e-78 295.4 236 64.4
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 4.9e-78 295.0 246 61.8
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.5e-77 292.7 240 63.3
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.5e-77 292.7 241 63.9
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.2e-77 292.4 185 78.9
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 3.2e-77 292.4 244 63.9
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 5.5e-77 291.6 236 64.0
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 9.3e-77 290.8 235 64.3
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.2e-76 290.4 247 58.3
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.6e-76 290.0 240 62.9
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 2.7e-76 289.3 241 63.1
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 6.0e-76 288.1 244 63.9
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 6.0e-76 288.1 239 63.2
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 7.9e-76 287.7 241 62.7
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.0e-75 287.3 249 63.1
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.0e-75 287.3 244 62.7
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.0e-75 287.3 244 62.7
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.3e-75 287.0 247 59.5
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 3.0e-75 285.8 238 64.7
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.0e-75 285.8 178 79.8
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.9e-75 285.4 239 65.7
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 5.1e-75 285.0 184 75.5
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.1e-75 285.0 239 65.7
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 6.7e-75 284.6 184 75.0
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 8.7e-75 284.3 239 64.0
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.1e-74 283.9 246 59.3
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.9e-74 283.1 184 74.5
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 9.6e-74 280.8 232 65.1
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.8e-73 279.3 233 60.9
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 2.8e-73 279.3 242 60.7
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 4.8e-73 278.5 240 62.9
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 6.3e-73 278.1 244 61.5
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 8.2e-73 277.7 179 73.2
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.4e-72 276.9 240 62.5
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.4e-72 276.9 239 62.8
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.4e-72 276.9 239 62.8
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.4e-72 276.2 242 59.1
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 3.1e-72 275.8 239 60.3
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 5.3e-72 275.0 176 74.4
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 9.0e-72 274.2 239 61.9
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 3.4e-71 272.3 235 59.1
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 3.4e-71 272.3 238 60.1
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 4.5e-71 271.9 240 62.1
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 7.6e-71 271.2 241 61.4
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 7.6e-71 271.2 241 61.4
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-70 270.4 241 61.0
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.3e-70 270.4 241 61.0
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.2e-70 269.6 240 61.2
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.2e-70 269.6 235 60.9
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.9e-70 269.2 258 58.9
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 5.0e-70 268.5 233 59.7
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.5e-70 268.1 245 58.4
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 8.4e-70 267.7 236 59.3
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.1e-69 267.3 247 57.5
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.1e-69 267.3 242 58.7
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.1e-69 267.3 254 56.7
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.4e-69 266.9 236 60.6
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.5e-69 266.2 240 60.8
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.5e-69 266.2 240 60.8
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 2.5e-69 266.2 186 69.9
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.2e-69 265.8 246 57.3
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.2e-69 265.8 255 54.9
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 4.2e-69 265.4 252 57.1
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 5.5e-69 265.0 185 69.7
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 7.2e-69 264.6 178 72.5
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 7.2e-69 264.6 255 53.7
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 7.2e-69 264.6 242 59.9
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 9.3e-69 264.2 185 69.2
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 9.3e-69 264.2 163 77.3
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.2e-68 263.8 247 56.7
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.6e-68 263.5 240 58.8
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.6e-68 261.9 167 74.3
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 6.1e-68 261.5 238 56.7
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 6.1e-68 261.5 239 60.3
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 7.9e-68 261.2 231 59.3
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 7.9e-68 261.2 236 60.2
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.8e-67 260.0 238 57.1
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 2.3e-67 259.6 238 57.6
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.9e-67 258.8 228 63.2
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.5e-66 256.9 241 56.8
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.3e-66 255.8 235 57.4
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 5.7e-66 255.0 238 58.4
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 2.2e-65 253.1 243 55.6
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.2e-65 251.1 163 76.1
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.1e-64 250.8 178 66.9
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.4e-64 250.4 240 55.4
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.8e-64 250.0 248 54.4
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 2.4e-64 249.6 230 57.8
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 2.4e-64 249.6 170 69.4
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 2.4e-64 249.6 242 55.4
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.1e-64 248.8 150 80.7
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.9e-62 242.7 147 81.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.8e-62 242.3 215 58.6
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 5.0e-62 241.9 242 56.2
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 3.2e-61 239.2 173 64.7
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 7.2e-61 238.0 173 64.2
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 2.3e-59 233.0 233 53.6
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 3.9e-59 232.3 234 50.9
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.0e-58 229.9 164 73.2
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.2e-57 226.5 221 57.0
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 4.8e-57 225.3 173 61.8
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.1e-56 224.2 236 53.4
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.1e-56 222.2 224 54.0
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.7e-54 216.9 238 50.0
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 8.5e-54 214.5 231 51.9
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.4e-53 213.8 192 57.3
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.7e-52 209.5 172 57.0
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.7e-52 208.8 132 75.8
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.7e-52 208.8 192 52.1
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 9.1e-48 194.5 163 62.6
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.9e-45 186.8 147 68.0
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 2.2e-41 173.3 109 72.5
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 3.0e-35 152.9 106 66.0
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 4.4e-34 149.1 150 50.7
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 5.4e-32 142.1 220 36.8
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.2e-31 141.0 181 40.3
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 3.8e-30 136.0 192 41.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.5e-29 133.3 230 35.7
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-26 124.4 76 77.6
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 9.8e-26 121.3 156 39.7
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.8e-19 100.5 86 58.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.6e-18 96.7 150 37.3
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.1e-16 89.4 105 50.5
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.5e-13 80.1 96 41.7
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 2.9e-09 66.6 54 51.9
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 4.9e-09 65.9 53 52.8
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.2e-07 61.2 56 53.6


User provided reference genes

Program Settings