Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 7.6e-107 390.6 206 100.0
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 2.9e-74 282.3 205 68.3
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 2.9e-74 282.3 205 68.3
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 3.8e-74 282.0 210 66.2
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 1.7e-66 256.5 211 61.1
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 4.6e-64 248.4 211 60.2
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 1.4e-60 236.9 213 56.8
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 5.3e-60 235.0 207 60.9
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 8.5e-58 227.6 209 55.0
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 1.6e-56 223.4 206 58.7
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 1.4e-55 220.3 208 56.7
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 2.3e-55 219.5 206 58.3
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 2.3e-55 219.5 206 58.3
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 2.3e-55 219.5 211 53.6
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 1.5e-54 216.9 209 57.4
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 9.7e-54 214.2 209 55.5
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 1.7e-53 213.4 209 54.1
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 3.7e-53 212.2 208 51.0
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 1.8e-52 209.9 209 59.8
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 9.1e-52 207.6 219 59.4
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 2.6e-51 206.1 212 50.0
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 7.7e-51 204.5 212 50.0
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 1.0e-50 204.1 209 54.1
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.0e-50 204.1 212 49.1
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 2.9e-50 202.6 217 54.4
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 2.9e-50 202.6 204 54.4
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 2.9e-50 202.6 206 55.3
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 3.8e-50 202.2 212 51.4
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 5.0e-50 201.8 223 52.9
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 6.5e-50 201.4 211 57.8
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 1.1e-49 200.7 199 53.8
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 1.1e-49 200.7 208 58.2
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 1.9e-49 199.9 202 55.4
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 5.5e-49 198.4 209 49.3
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 9.4e-49 197.6 202 53.5
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 1.2e-48 197.2 209 53.1
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 2.1e-48 196.4 215 50.7
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 2.1e-48 196.4 198 58.1
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 2.1e-48 196.4 209 56.9
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 2.7e-48 196.1 209 49.3
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 2.7e-48 196.1 201 46.8
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 2.7e-48 196.1 201 52.7
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 3.6e-48 195.7 206 51.9
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 4.7e-48 195.3 206 51.9
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 1.8e-47 193.4 211 49.3
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 1.8e-47 193.4 203 57.1
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 4.0e-47 192.2 206 51.0
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 1.2e-46 190.7 201 46.3
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 3.3e-46 189.1 209 47.4
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 5.7e-46 188.3 211 51.7
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 1.7e-45 186.8 205 56.1
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 2.2e-45 186.4 204 46.1
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 3.7e-45 185.7 205 56.6
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 6.3e-45 184.9 209 45.0
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 8.2e-45 184.5 208 50.5
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 1.4e-44 183.7 197 57.4
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 3.1e-44 182.6 202 46.5
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 5.3e-44 181.8 206 52.9
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 5.3e-44 181.8 205 54.6
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 7.0e-44 181.4 203 50.2
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.6e-43 180.3 200 46.0
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 7.7e-43 177.9 202 46.5
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 1.3e-42 177.2 216 55.1
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 1.7e-42 176.8 210 49.0
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 1.7e-42 176.8 212 52.4
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 2.2e-42 176.4 195 51.8
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 6.5e-42 174.9 202 56.9
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.5e-41 173.7 202 44.1
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 2.5e-41 172.9 200 55.0
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 7.2e-41 171.4 215 54.0
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 7.2e-41 171.4 209 48.8
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 1.2e-40 170.6 156 54.5
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 5.2e-39 165.2 210 48.1
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 9.8e-38 161.0 236 42.4
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.2e-37 159.8 227 39.2
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 2.8e-37 159.5 209 45.0
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 3.7e-37 159.1 236 39.8
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 6.3e-37 158.3 211 48.3
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 4.1e-36 155.6 198 44.4
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 1.6e-35 153.7 197 41.1
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 5.9e-35 151.8 221 45.7
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 1.0e-34 151.0 215 42.3
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.9e-34 149.4 219 37.9
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 8.6e-34 147.9 206 42.7
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 1.9e-33 146.7 205 39.5
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 1.2e-32 144.1 206 49.5
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 1.2e-32 144.1 172 45.3
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 1.8e-31 140.2 150 46.7
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 2.2e-29 133.3 137 47.4
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 6.3e-29 131.7 203 37.9
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 3.1e-28 129.4 207 39.1
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 1.6e-27 127.1 210 39.0
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 2.9e-26 122.9 218 43.1
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 4.3e-25 119.0 187 38.5
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 5.6e-25 118.6 215 37.7
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.0e-23 114.4 195 39.0
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.0e-23 114.4 195 39.0
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 1.4e-23 114.0 195 39.5
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 4.0e-23 112.5 197 38.1
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 1.2e-22 110.9 194 38.7
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 1.5e-22 110.5 216 43.5
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 1.5e-22 110.5 216 43.5
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 2.6e-22 109.8 192 39.1
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 3.4e-22 109.4 193 37.3
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 5.8e-22 108.6 134 47.8
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 5.8e-22 108.6 189 39.2
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 5.8e-22 108.6 193 39.4
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 9.8e-22 107.8 192 38.0
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 1.3e-21 107.5 192 38.0
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.2e-21 106.7 164 37.8
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 2.0e-19 100.1 215 34.9
Duzib093G2157 Durio zibethinus HOM05D006157 ORTHO05D007826 2.7e-19 99.8 102 51.0
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 6.0e-19 98.6 212 33.5
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 1.3e-18 97.4 156 40.4
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 3.6e-16 89.4 188 33.0
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 1.1e-15 87.8 177 33.3
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 8.9e-15 84.7 179 32.4
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 4.1e-12 75.9 191 32.5
CSS0005922 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 2.0e-11 73.6 137 38.7
FvH4_2g34701 Fragaria vesca HOM05D006157 ORTHO05D007826 2.5e-09 66.6 127 34.6
SalBow8G4867 Salvia bowleyana HOM05D006157 ORTHO05D007826 1.2e-08 64.3 34 76.5
Zm00001eb315050 Zea mays HOM05D006157 ORTHO05D007826 1.4e-07 60.8 237 24.5
HPP92_027520 Vanilla planifolia HOM05D006157 ORTHO05D007826 1.2e-06 57.8 149 35.6
Zm00001eb100900 Zea mays HOM05D006157 ORTHO05D007826 3.4e-06 56.2 34 70.6
Os09g0460100 Oryza sativa ssp. japonica HOM05D006157 ORTHO05D007826 5.8e-06 55.5 217 29.5


User provided reference genes

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