Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 2.6e-52 208.4 100 100.0
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 3.6e-46 188.0 90 97.8
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 4.3e-39 164.5 89 83.1
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.3e-39 164.5 89 83.1
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 7.3e-39 163.7 89 82.0
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 2.1e-38 162.2 90 82.2
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.6e-38 161.4 89 82.0
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 4.7e-38 161.0 90 82.2
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 4.7e-38 161.0 90 82.2
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 4.7e-38 161.0 88 81.8
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 1.1e-37 159.8 90 80.0
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 1.1e-37 159.8 90 80.0
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 1.4e-37 159.5 91 79.1
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 1.8e-37 159.1 85 85.9
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 1.8e-37 159.1 90 84.4
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 5.2e-37 157.5 96 77.1
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 5.2e-37 157.5 90 80.0
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 8.9e-37 156.8 90 80.0
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.2e-36 156.4 90 78.9
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 1.5e-36 156.0 88 81.8
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.5e-36 156.0 89 79.8
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 1.5e-36 156.0 90 80.0
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 2.0e-36 155.6 86 82.6
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 2.0e-36 155.6 90 78.9
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 2.6e-36 155.2 90 78.9
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 2.6e-36 155.2 86 81.4
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 3.4e-36 154.8 86 82.6
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 3.4e-36 154.8 90 80.0
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 3.4e-36 154.8 88 78.4
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 4.4e-36 154.5 89 79.8
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 4.4e-36 154.5 91 79.1
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 5.8e-36 154.1 88 80.7
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 5.8e-36 154.1 90 77.8
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 7.6e-36 153.7 90 76.7
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 9.9e-36 153.3 92 78.3
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 9.9e-36 153.3 86 84.9
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 1.3e-35 152.9 85 83.5
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 1.7e-35 152.5 90 76.7
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 2.2e-35 152.1 85 81.2
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 2.2e-35 152.1 85 81.2
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.2e-35 152.1 85 83.5
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.2e-35 152.1 85 83.5
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 2.2e-35 152.1 85 83.5
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 2.2e-35 152.1 89 79.8
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 2.2e-35 152.1 85 81.2
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 3.8e-35 151.4 86 79.1
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 3.8e-35 151.4 86 79.1
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 3.8e-35 151.4 88 78.4
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 6.4e-35 150.6 86 76.7
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 6.4e-35 150.6 88 76.1
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 1.1e-34 149.8 90 80.0
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 1.1e-34 149.8 83 79.5
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 1.1e-34 149.8 86 81.4
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 1.4e-34 149.4 90 74.4
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 1.4e-34 149.4 86 80.2
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 1.9e-34 149.1 87 77.0
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 2.4e-34 148.7 89 75.3
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 2.4e-34 148.7 84 82.1
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 3.2e-34 148.3 90 76.7
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 3.2e-34 148.3 90 74.4
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 3.2e-34 148.3 85 81.2
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 4.2e-34 147.9 90 72.2
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 5.4e-34 147.5 88 77.3
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 7.1e-34 147.1 90 75.6
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.6e-33 146.0 85 80.0
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.1e-33 145.6 86 79.1
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 2.7e-33 145.2 90 71.1
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 3.5e-33 144.8 90 72.2
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 3.5e-33 144.8 90 72.2
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 6.0e-33 144.1 89 75.3
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 7.8e-33 143.7 89 75.3
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 1.3e-32 142.9 83 79.5
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 1.7e-32 142.5 89 75.3
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 5.1e-32 141.0 88 72.7
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 1.1e-31 139.8 89 73.0
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 2.5e-31 138.7 87 77.0
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 3.3e-31 138.3 85 75.3
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 4.3e-31 137.9 83 73.5
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 1.3e-30 136.3 87 73.6
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 1.6e-30 136.0 86 72.1
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 4.8e-30 134.4 83 75.9
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.4e-29 132.9 85 76.5
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 4.0e-29 131.3 83 72.3
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 6.9e-29 130.6 83 77.1
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 2.0e-28 129.0 87 67.8
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.2e-27 125.6 90 64.4
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 2.2e-27 125.6 73 80.8
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 4.9e-27 124.4 85 69.4
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 7.1e-26 120.6 73 76.7
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 2.1e-25 119.0 84 58.3
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 1.1e-23 113.2 86 55.8
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.5e-23 112.8 68 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 2.8e-22 108.6 78 66.7
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 2.8e-22 108.6 69 75.4
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 2.9e-19 98.6 68 67.6
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.9e-18 95.9 66 66.7
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 5.4e-18 94.4 63 71.4
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 2.1e-17 92.4 93 54.8
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 2.1e-17 92.4 79 64.6
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 6.0e-17 90.9 50 80.0
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 1.8e-16 89.4 63 65.1
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 2.1e-09 65.9 95 40.0
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 1.6e-06 56.2 27 92.6
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 2.1e-06 55.8 29 79.3
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 4.8e-06 54.7 27 85.2
Medtr1g102140 Medicago truncatula HOM05D005922 ORTHO05D006934 4.8e-06 54.7 42 64.3


User provided reference genes

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