Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1114.0 560 100.0
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 1.1e-195 687.2 389 90.2
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 7.2e-176 621.3 390 81.5
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 6.7e-174 614.8 390 80.0
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 1.1e-171 607.4 390 78.7
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 6.9e-171 604.7 390 78.5
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 6.9e-171 604.7 390 79.0
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 9.1e-171 604.4 390 78.7
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 2.0e-170 603.2 425 73.4
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 7.7e-170 601.3 390 78.5
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 1.0e-169 600.9 389 77.1
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 3.8e-169 599.0 390 78.2
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 2.5e-168 596.3 390 77.2
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 9.4e-168 594.3 389 76.1
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 1.2e-167 594.0 389 77.4
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 1.6e-167 593.6 426 71.8
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 4.7e-167 592.0 390 76.7
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 4.7e-167 592.0 390 77.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 1.4e-166 590.5 390 76.4
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 1.8e-166 590.1 390 77.4
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 3.9e-166 589.0 389 75.8
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 3.9e-166 589.0 381 79.0
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 2.6e-165 586.3 390 76.2
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 5.7e-165 585.1 389 75.6
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 9.7e-165 584.3 389 75.6
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 6.3e-164 581.6 390 74.6
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 1.1e-163 580.9 389 76.3
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 1.1e-163 580.9 389 76.3
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 1.4e-163 580.5 390 76.2
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 3.1e-163 579.3 378 78.6
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 4.1e-163 578.9 426 70.0
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.1e-163 578.9 390 74.9
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 4.1e-163 578.9 390 74.9
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 9.1e-163 577.8 425 70.6
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 3.5e-162 575.9 390 74.9
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 4.5e-162 575.5 389 76.1
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 5.9e-162 575.1 540 58.5
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 5.9e-162 575.1 389 77.1
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 2.2e-161 573.2 427 70.7
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 3.8e-161 572.4 397 74.6
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 8.5e-161 571.2 460 67.2
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 1.1e-160 570.9 414 70.8
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 2.5e-160 569.7 390 73.8
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 5.5e-160 568.5 389 75.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 9.4e-160 567.8 389 74.8
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-159 567.4 389 74.3
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 1.2e-159 567.4 389 74.6
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 1.6e-159 567.0 389 74.0
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 2.1e-159 566.6 425 69.4
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 3.6e-159 565.8 389 74.6
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 4.7e-159 565.5 395 74.2
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 6.1e-159 565.1 414 70.0
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 8.0e-159 564.7 470 64.7
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 1.4e-158 563.9 425 68.9
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 1.8e-158 563.5 407 71.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 1.8e-158 563.5 390 73.3
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 1.8e-158 563.5 390 73.1
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 2.3e-158 563.1 389 72.2
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 2.3e-158 563.1 389 72.5
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 3.0e-158 562.8 389 72.5
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 3.0e-158 562.8 389 72.5
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 3.0e-158 562.8 389 72.5
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 3.0e-158 562.8 425 67.1
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 3.0e-158 562.8 398 72.4
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 1.2e-157 560.8 389 72.2
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 2.0e-157 560.1 390 73.1
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 3.3e-157 559.3 389 74.3
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 4.4e-157 558.9 389 74.0
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 7.5e-157 558.1 389 72.0
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 7.5e-157 558.1 389 73.5
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 9.7e-157 557.8 389 73.3
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 1.3e-156 557.4 383 73.9
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 1.3e-156 557.4 389 73.3
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 1.7e-156 557.0 390 71.8
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 2.2e-156 556.6 389 72.2
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 2.2e-156 556.6 389 72.0
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 2.2e-156 556.6 391 73.4
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 2.8e-156 556.2 389 73.3
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 4.8e-156 555.4 389 74.3
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 4.8e-156 555.4 426 66.7
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 6.3e-156 555.1 389 71.2
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 6.3e-156 555.1 390 71.5
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 6.3e-156 555.1 390 72.3
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 2.7e-154 549.7 390 71.8
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 2.2e-153 546.6 389 72.5
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 8.5e-153 544.7 389 72.5
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.1e-152 544.3 360 76.1
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 1.2e-151 540.8 389 72.0
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 1.0e-150 537.7 390 72.3
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 8.8e-150 534.6 426 66.4
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 2.6e-149 533.1 389 70.4
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 3.4e-149 532.7 390 70.3
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 6.3e-148 528.5 385 70.9
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 6.3e-148 528.5 400 69.2
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 8.3e-148 528.1 390 69.5
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 4.1e-147 525.8 390 68.7
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 7.7e-146 521.5 390 69.5
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 4.2e-144 515.8 390 68.2
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 7.2e-144 515.0 419 63.5
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 4.7e-143 512.3 388 66.8
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 1.0e-142 511.1 389 66.3
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 3.4e-141 506.1 388 66.5
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 1.7e-140 503.8 409 64.8
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 2.2e-140 503.4 346 73.1
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 1.8e-139 500.4 347 74.4
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 1.7e-137 493.8 391 67.3
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.2e-135 487.6 398 65.3
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 1.6e-135 487.3 384 66.7
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 8.9e-134 481.5 424 59.2
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 1.3e-132 477.6 358 69.3
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 8.3e-132 474.9 388 65.2
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 1.0e-129 468.0 371 67.9
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 3.9e-129 466.1 356 67.7
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 1.6e-127 460.7 475 56.0
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.1e-126 458.0 427 56.4
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.3e-126 456.8 355 67.9
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 8.9e-126 454.9 425 56.0
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 3.7e-124 449.5 308 75.3
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.7e-122 443.4 429 55.2
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 4.0e-118 429.5 433 53.1
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 5.8e-117 425.6 433 52.9
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.6e-114 417.5 422 50.5
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-113 414.1 277 76.9
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 3.9e-113 412.9 277 76.5
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 8.6e-113 411.8 319 65.5
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 7.3e-112 408.7 435 52.0
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 4.0e-110 402.9 355 63.1
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.1e-102 378.3 295 68.1
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.7e-100 370.9 193 87.6
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.8e-100 369.8 250 74.4
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 3.6e-95 353.2 430 49.8
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 3.0e-89 333.6 277 64.3
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.0e-85 320.9 238 72.7
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 1.1e-78 298.5 240 68.3
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 2.2e-76 290.8 162 84.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 7.4e-72 275.8 282 57.1
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.7e-71 273.5 150 84.0
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.8e-70 271.2 239 61.9
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.5e-69 268.1 238 63.0
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 7.9e-58 229.2 162 72.2
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 5.3e-54 216.5 329 37.7
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.5e-53 214.9 158 73.4
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 7.7e-53 212.6 166 68.1
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.6e-50 204.9 154 70.1
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 3.3e-48 197.2 114 80.7
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 7.7e-45 186.0 144 75.7
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-41 175.6 138 69.6
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 3.4e-32 144.1 473 27.7
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 3.1e-30 137.5 109 63.3
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.0e-30 136.3 113 59.3
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 4.5e-29 133.7 77 77.9
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 8.6e-28 129.4 120 59.2
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.9e-20 104.4 66 72.7
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 4.3e-19 100.5 115 50.4
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.2e-16 92.4 90 51.1
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.7e-15 88.6 73 67.1
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 2.5e-11 74.7 46 76.1
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 3.3e-11 74.3 76 52.6
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 7.5e-08 63.2 70 55.7


User provided reference genes

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