Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 1.5e-80 302.8 148 100.0
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.7e-47 193.0 148 64.9
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 1.3e-44 183.3 149 61.7
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 2.9e-44 182.2 148 61.5
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 5.0e-44 181.4 147 59.9
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 8.0e-42 174.1 149 59.1
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.8e-41 172.9 151 60.9
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.2e-40 170.2 149 57.0
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.4e-40 168.7 149 56.4
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 3.4e-40 168.7 149 56.4
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 4.4e-40 168.3 148 53.4
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.2e-39 166.0 148 54.7
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 8.3e-39 164.1 148 54.1
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.1e-38 162.2 148 53.4
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 4.1e-38 161.8 141 57.4
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 5.4e-38 161.4 144 57.6
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 1.6e-37 159.8 141 57.4
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 4.5e-37 158.3 141 56.7
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 1.3e-36 156.8 149 53.7
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.3e-36 156.0 141 54.6
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 2.9e-36 155.6 141 56.7
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 5.0e-36 154.8 149 50.3
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.5e-35 153.3 141 55.3
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.5e-35 153.3 149 50.3
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.6e-34 149.8 139 52.5
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 4.7e-34 148.3 138 53.6
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 6.1e-34 147.9 150 51.3
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 8.0e-34 147.5 137 54.0
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 8.0e-34 147.5 150 53.3
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 1.8e-33 146.4 150 54.0
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.8e-33 146.4 152 53.9
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 2.3e-33 146.0 152 53.9
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.3e-33 146.0 152 53.9
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 6.8e-33 144.4 152 53.3
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 6.8e-33 144.4 133 54.1
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 8.9e-33 144.1 140 53.6
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.2e-32 143.7 157 54.1
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 1.2e-32 143.7 143 52.4
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 2.6e-32 142.5 149 53.0
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 3.4e-32 142.1 152 50.0
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 5.8e-32 141.4 150 51.3
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 5.8e-32 141.4 149 51.0
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 5.8e-32 141.4 151 49.0
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 7.5e-32 141.0 140 52.1
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 2.2e-31 139.4 147 51.0
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 4.9e-31 138.3 154 51.3
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 6.4e-31 137.9 151 51.0
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 6.4e-31 137.9 154 50.6
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 6.4e-31 137.9 119 55.5
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 8.3e-31 137.5 157 50.3
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 1.4e-30 136.7 143 48.3
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 2.4e-30 136.0 149 48.3
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 7.0e-30 134.4 152 49.3
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 9.2e-30 134.0 142 50.0
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 9.2e-30 134.0 142 50.0
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.6e-29 133.3 140 52.9
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 2.0e-29 132.9 147 46.9
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 3.5e-29 132.1 147 47.6
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 3.5e-29 132.1 152 47.4
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 6.0e-29 131.3 122 53.3
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.0e-28 130.6 158 50.6
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.3e-28 130.2 153 47.1
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 3.0e-28 129.0 148 45.9
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 6.6e-28 127.9 150 48.7
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 8.6e-28 127.5 139 48.2
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 8.6e-28 127.5 140 48.6
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.9e-27 126.3 150 46.0
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 1.9e-27 126.3 153 47.1
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.9e-27 126.3 143 51.0
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.5e-27 125.9 153 45.8
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 3.3e-27 125.6 150 46.0
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 5.6e-27 124.8 159 44.0
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 1.2e-26 123.6 153 45.8
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 1.2e-26 123.6 153 45.8
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 2.1e-26 122.9 154 44.8
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 8.0e-26 120.9 143 46.2
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.1e-25 120.6 153 42.5
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.4e-25 120.2 152 45.4
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 1.8e-25 119.8 149 46.3
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 1.8e-25 119.8 141 46.8
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.3e-25 119.4 162 43.8
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 5.2e-25 118.2 145 44.1
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 5.2e-25 118.2 145 44.1
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 6.8e-25 117.9 122 49.2
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.2e-24 117.1 151 45.0
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 1.2e-24 117.1 141 46.1
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 3.4e-24 115.5 135 47.4
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 7.5e-24 114.4 139 46.0
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 1.7e-23 113.2 136 46.3
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 2.2e-23 112.8 119 47.9
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.2e-23 112.8 135 43.0
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.9e-23 112.5 151 41.1
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 4.9e-23 111.7 135 44.4
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 2.4e-22 109.4 167 41.3
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.4e-22 109.4 118 52.5
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 7.0e-22 107.8 150 44.0
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 1.2e-21 107.1 141 46.8
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 2.1e-21 106.3 143 42.7
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 3.5e-21 105.5 147 44.2
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 4.6e-21 105.1 139 45.3
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 4.6e-21 105.1 143 43.4
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 7.8e-21 104.4 149 42.3
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 1.0e-20 104.0 119 48.7
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 1.3e-20 103.6 105 51.4
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 3.0e-20 102.4 139 43.9
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 3.9e-20 102.1 142 44.4
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 3.9e-20 102.1 138 42.8
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 5.1e-20 101.7 149 38.9
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 5.1e-20 101.7 135 44.4
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 1.1e-19 100.5 148 39.9
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 2.5e-19 99.4 138 42.0
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 3.3e-19 99.0 136 42.6
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 4.3e-19 98.6 139 42.4
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 5.6e-19 98.2 147 38.8
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 7.3e-19 97.8 153 37.9
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 9.5e-19 97.4 149 37.6
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 1.2e-18 97.1 141 42.6
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 1.2e-18 97.1 140 41.4
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.6e-18 96.7 140 40.7
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 1.6e-18 96.7 139 41.7
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.6e-18 96.7 140 40.7
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 1.6e-18 96.7 119 45.4
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 2.1e-18 96.3 150 38.7
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 2.1e-18 96.3 157 40.8
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 2.8e-18 95.9 151 40.4
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 6.2e-18 94.7 135 40.7
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 8.1e-18 94.4 104 49.0
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.4e-17 93.6 135 45.2
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 1.8e-17 93.2 142 41.5
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 6.8e-17 91.3 151 39.7
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 1.2e-16 90.5 104 49.0
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 1.2e-16 90.5 104 49.0
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.0e-16 89.7 149 38.3
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.4e-16 88.6 146 39.7
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 9.9e-16 87.4 105 45.7
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.3e-15 87.0 140 37.9
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 3.7e-15 85.5 142 36.6
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.9e-15 85.1 140 37.9
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.4e-14 82.8 82 52.4
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 3.2e-14 82.4 143 38.5
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.1e-14 82.0 154 36.4
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 4.1e-14 82.0 134 38.8
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 7.1e-14 81.3 137 36.5
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 9.2e-14 80.9 110 45.5
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.7e-13 79.3 140 34.3
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 2.7e-13 79.3 151 35.1
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.5e-13 79.0 138 31.2
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 7.8e-13 77.8 124 38.7
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.7e-12 76.6 134 35.8
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 1.7e-12 76.6 99 41.4
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 2.3e-12 76.3 135 35.6
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.1e-12 75.1 141 31.2
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 6.6e-12 74.7 50 64.0
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.1e-11 73.9 65 53.8
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.5e-11 73.6 132 34.8
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.5e-11 73.6 141 34.8
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.5e-11 72.8 105 43.8
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.6e-11 71.6 147 36.1
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 7.3e-11 71.2 138 31.2
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 9.5e-11 70.9 112 41.1
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.6e-10 70.1 137 32.8
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.1e-10 69.7 145 29.7
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 1.4e-09 67.0 156 32.7
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.0e-09 65.5 142 28.2
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.2e-08 63.9 66 48.5
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.4e-08 62.0 40 67.5
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.3e-07 60.5 126 34.9
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.7e-07 60.1 105 39.0
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 3.8e-07 58.9 117 29.9
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 6.4e-07 58.2 126 31.7
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 8.4e-07 57.8 138 31.2
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 1.4e-06 57.0 123 29.3


User provided reference genes

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