Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G020950 Manihot esculenta HOM05D000367 ORTHO05D001227 2.6e-17 90.9 43 100.0
Prupe.2G072900 Prunus persica HOM05D000367 ORTHO05D001227 7.3e-12 72.8 40 82.5
MSTRG.12390 Avicennia marina HOM05D000367 ORTHO05D001227 9.5e-12 72.4 40 82.5
Nitab4.5_0001781g0190 Nicotiana tabacum HOM05D000367 ORTHO05D001227 9.5e-12 72.4 40 82.5
SGA_v2.0_scaffold268G46214 Striga asiatica HOM05D000367 ORTHO05D001227 9.5e-12 72.4 40 82.5
TAR636G2255 Trochodendron aralioides HOM05D000367 ORTHO05D001227 9.5e-12 72.4 40 85.0
ClCG03G011910 Citrullus lanatus HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
Cc02_g09310 Coffea canephora HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
Haze_03454 Corylus avellana HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
Haze_03459 Corylus avellana HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
MELO3C009996.2 Cucumis melo HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
CsaV3_1G044020 Cucumis sativus L. HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
Duzib168G1856 Durio zibethinus HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
Gohir.A05G286400 Gossypium hirsutum HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
Lalb_Chr01g0005831 Lupinus albus HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
Thecc.10G117800 Theobroma cacao HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
TWI79G0053 Tripterygium wilfordii HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
GSVIVG01036049001 Vitis vinifera HOM05D000367 ORTHO05D001227 1.2e-11 72.0 40 82.5
Glyma.12G190100 Glycine max HOM05D000367 ORTHO05D001227 2.1e-11 71.2 40 80.0
Glyma.13G311600 Glycine max HOM05D000367 ORTHO05D001227 2.1e-11 71.2 40 80.0
unitig_22.g6160 Utricularia gibba HOM05D000367 ORTHO05D001227 2.1e-11 71.2 40 80.0
unitig_8.g2978 Utricularia gibba HOM05D000367 ORTHO05D001227 2.1e-11 71.2 40 80.0
arahy.Tifrunner.gnm1.ann1.GGYY5V Arachis hypogaea HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
arahy.Tifrunner.gnm1.ann1.Y5QTY6 Arachis hypogaea HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
Ciclev10028531m.g Citrus clementina HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
Glyma.11G172401 Glycine max HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
Glyma.12G095700 Glycine max HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
Lj3g0007496 Lotus japonicus HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
Lalb_Chr19g0136181 Lupinus albus HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
Manes.10G060650 Manihot esculenta HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
Manes.10G060800 Manihot esculenta HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
Phvul.011G100000 Phaseolus vulgaris HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
VMungo1127G0385 Vigna mungo HOM05D000367 ORTHO05D001227 2.8e-11 70.9 40 80.0
MSTRG.18794 Avicennia marina HOM05D000367 ORTHO05D001227 3.6e-11 70.5 40 80.0
Ca_01626_v3 Cicer arietinum L. HOM05D000367 ORTHO05D001227 3.6e-11 70.5 40 80.0
PSO384G4949 Papaver somniferum HOM05D000367 ORTHO05D001227 3.6e-11 70.5 40 80.0
CAN.G1433.2 Capsicum annuum HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 80.0
AUR62001569 Chenopodium quinoa HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 80.0
AUR62020215 Chenopodium quinoa HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 80.0
Ca_02969_v3 Cicer arietinum L. HOM05D000367 ORTHO05D001227 4.7e-11 70.1 39 82.1
Haze_23582 Corylus avellana HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 80.0
Dinv03820 Davidia involucrata HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 80.0
Duzib128G0557 Durio zibethinus HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 80.0
Lsat_1_v5_gn_2_106121 Lactuca sativa HOM05D000367 ORTHO05D001227 4.7e-11 70.1 39 82.1
MD03G1159100 Malus domestica HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 77.5
MD11G1174700 Malus domestica HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 77.5
Medtr4g050420 Medicago truncatula HOM05D000367 ORTHO05D001227 4.7e-11 70.1 39 82.1
Psat7g200120 Pisum sativum HOM05D000367 ORTHO05D001227 4.7e-11 70.1 39 82.1
QL01p019285 Quercus lobata HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 80.0
Solyc05g055160.3 Solanum lycopersicum HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 80.0
Sopen05g033580 Solanum pennellii HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 80.0
TPR.G4644 Trifolium pratense HOM05D000367 ORTHO05D001227 4.7e-11 70.1 39 82.1
TWI31G0939 Tripterygium wilfordii HOM05D000367 ORTHO05D001227 4.7e-11 70.1 40 80.0
Atru.chr3.3079 Acer truncatum HOM05D000367 ORTHO05D001227 6.2e-11 69.7 40 80.0
Atru.chr3.3091 Acer truncatum HOM05D000367 ORTHO05D001227 6.2e-11 69.7 40 80.0
CAN.G5.33 Capsicum annuum HOM05D000367 ORTHO05D001227 6.2e-11 69.7 40 80.0
FAN01G2581 Fragaria x ananassa HOM05D000367 ORTHO05D001227 6.2e-11 69.7 40 77.5
Lalb_Chr03g0028491 Lupinus albus HOM05D000367 ORTHO05D001227 6.2e-11 69.7 40 77.5
MBI18_g31934_MAGBIO Magnolia biondii HOM05D000367 ORTHO05D001227 6.2e-11 69.7 39 82.1
Prupe.3G066800 Prunus persica HOM05D000367 ORTHO05D001227 6.2e-11 69.7 40 80.0
VMungo1080G0842 Vigna mungo HOM05D000367 ORTHO05D001227 6.2e-11 69.7 40 77.5
EL10Ac4g08729 Beta vulgaris HOM05D000367 ORTHO05D001227 8.1e-11 69.3 40 77.5
FAN11G0264 Fragaria x ananassa HOM05D000367 ORTHO05D001227 8.1e-11 69.3 40 80.0
FAN21G0566 Fragaria x ananassa HOM05D000367 ORTHO05D001227 8.1e-11 69.3 40 80.0
FAN25G0717 Fragaria x ananassa HOM05D000367 ORTHO05D001227 8.1e-11 69.3 40 80.0
Medtr2g087660 Medicago truncatula HOM05D000367 ORTHO05D001227 8.1e-11 69.3 40 77.5
PSO782G2308 Papaver somniferum HOM05D000367 ORTHO05D001227 8.1e-11 69.3 40 77.5
Psat5g262440 Pisum sativum HOM05D000367 ORTHO05D001227 8.1e-11 69.3 40 77.5
ATR0697G180 Amborella trichopoda HOM05D000367 ORTHO05D001227 1.1e-10 68.9 40 77.5
COL.COLO4_25394 Corchorus olitorius HOM05D000367 ORTHO05D001227 1.1e-10 68.9 40 77.5
FAN16G1538 Fragaria x ananassa HOM05D000367 ORTHO05D001227 1.1e-10 68.9 40 77.5
Lj2C952T4 Lonicera japonica HOM05D000367 ORTHO05D001227 1.1e-10 68.9 40 77.5
PSO339G1203 Papaver somniferum HOM05D000367 ORTHO05D001227 1.1e-10 68.9 40 80.0
Prupe.6G146900 Prunus persica HOM05D000367 ORTHO05D001227 1.1e-10 68.9 40 77.5
unitig_37.g12888 Utricularia gibba HOM05D000367 ORTHO05D001227 1.4e-10 68.6 40 77.5
Peaxi162Scf00135g00138 Petunia axillaris HOM05D000367 ORTHO05D001227 1.8e-10 68.2 40 77.5
Migut.N02445 Erythranthe guttata HOM05D000367 ORTHO05D001227 2.3e-10 67.8 40 75.0
Migut.N02446 Erythranthe guttata HOM05D000367 ORTHO05D001227 2.3e-10 67.8 40 72.5
PSO591G0502 Papaver somniferum HOM05D000367 ORTHO05D001227 2.3e-10 67.8 40 77.5
Potri.010G243100 Populus trichocarpa HOM05D000367 ORTHO05D001227 2.3e-10 67.8 39 79.5
TPR.G4188 Trifolium pratense HOM05D000367 ORTHO05D001227 2.3e-10 67.8 39 76.9
MSTRG.17679 Avicennia marina HOM05D000367 ORTHO05D001227 3.1e-10 67.4 39 76.9
Cc01_g07750 Coffea canephora HOM05D000367 ORTHO05D001227 3.1e-10 67.4 40 77.5
Eucgr.J00583 Eucalyptus grandis HOM05D000367 ORTHO05D001227 4.0e-10 67.0 40 75.0
unitig_22.g5674 Utricularia gibba HOM05D000367 ORTHO05D001227 4.0e-10 67.0 40 75.0
HPP92_019545 Vanilla planifolia HOM05D000367 ORTHO05D001227 4.0e-10 67.0 39 76.9
AUR62021955 Chenopodium quinoa HOM05D000367 ORTHO05D001227 5.2e-10 66.6 40 77.5
AUR62044239 Chenopodium quinoa HOM05D000367 ORTHO05D001227 5.2e-10 66.6 40 77.5
Sc12g0000360 Simmondsia chinensis HOM05D000367 ORTHO05D001227 5.2e-10 66.6 40 75.0
Actinidia24262 Actinidia chinensis HOM05D000367 ORTHO05D001227 6.8e-10 66.2 40 75.0
BolC3t13689H Brassica oleracea HOM05D000367 ORTHO05D001227 6.8e-10 66.2 39 74.4
PSO017G5921 Papaver somniferum HOM05D000367 ORTHO05D001227 6.8e-10 66.2 40 77.5
Phvul.005G118100 Phaseolus vulgaris HOM05D000367 ORTHO05D001227 6.8e-10 66.2 39 74.4
Sp6g23130 Schrenkiella parvula HOM05D000367 ORTHO05D001227 6.8e-10 66.2 40 72.5
AT5G22060 Arabidopsis thaliana HOM05D000367 ORTHO05D001227 8.9e-10 65.9 39 74.4
BcaB08g36456 Brassica carinata HOM05D000367 ORTHO05D001227 8.9e-10 65.9 39 74.4
BcaC03g13855 Brassica carinata HOM05D000367 ORTHO05D001227 8.9e-10 65.9 39 74.4
BNapus_Darmor_BZH_scaffold_38p00900 Brassica napus HOM05D000367 ORTHO05D001227 8.9e-10 65.9 39 74.4
BolC2t07134H Brassica oleracea HOM05D000367 ORTHO05D001227 8.9e-10 65.9 39 74.4
BraA02t05636Z Brassica rapa HOM05D000367 ORTHO05D001227 8.9e-10 65.9 39 74.4
Thhalv10013655m.g Eutrema salsugineum HOM05D000367 ORTHO05D001227 8.9e-10 65.9 39 74.4
THA.LOC104816976 Tarenaya hassleriana HOM05D000367 ORTHO05D001227 8.9e-10 65.9 40 75.0
Actinidia07286 Actinidia chinensis HOM05D000367 ORTHO05D001227 1.2e-09 65.5 40 72.5
Actinidia37504 Actinidia chinensis HOM05D000367 ORTHO05D001227 1.2e-09 65.5 40 72.5
BcaC01g06607 Brassica carinata HOM05D000367 ORTHO05D001227 1.2e-09 65.5 39 74.4
C03p12160 Brassica napus HOM05D000367 ORTHO05D001227 1.2e-09 65.5 39 74.4
CAN.G404.24 Capsicum annuum HOM05D000367 ORTHO05D001227 1.2e-09 65.5 40 80.0
Potri.001G215132 Populus trichocarpa HOM05D000367 ORTHO05D001227 1.2e-09 65.5 40 75.0
PGR119G0049 Punica granatum HOM05D000367 ORTHO05D001227 1.2e-09 65.5 40 75.0
Cpa.g.sc103.25 Carica papaya HOM05D000367 ORTHO05D001227 1.5e-09 65.1 40 75.0
PSO063G4426 Papaver somniferum HOM05D000367 ORTHO05D001227 1.5e-09 65.1 40 72.5
PSO063G5639 Papaver somniferum HOM05D000367 ORTHO05D001227 1.5e-09 65.1 40 72.5
Zm00001eb103670 Zea mays HOM05D000367 ORTHO05D001227 1.5e-09 65.1 40 72.5
Zm00001eb404330 Zea mays HOM05D000367 ORTHO05D001227 1.5e-09 65.1 40 72.5
Aa31LG4G13680 Aethionema arabicum HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 74.4
AL5G22120 Arabidopsis lyrata HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 74.4
AT3G44110 Arabidopsis thaliana HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 74.4
BcaB02g10756 Brassica carinata HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 74.4
BcaC04g19538 Brassica carinata HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 71.8
A10p18690 Brassica napus HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 71.8
A10p18700 Brassica napus HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 71.8
C09p54630 Brassica napus HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 71.8
C09p54640 Brassica napus HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 71.8
BraA10t43949Z Brassica rapa HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 71.8
BraA10t43950Z Brassica rapa HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 71.8
CSS0043511 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D001227 2.0e-09 64.7 40 77.5
Carub.0005s0986 Capsella rubella HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 74.4
CDE10G0966 Ceratophyllum demersum HOM05D000367 ORTHO05D001227 2.0e-09 64.7 40 72.5
Thhalv10010407m.g Eutrema salsugineum HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 74.4
Sp5g17220 Schrenkiella parvula HOM05D000367 ORTHO05D001227 2.0e-09 64.7 39 74.4
Zm00001eb091890 Zea mays HOM05D000367 ORTHO05D001227 2.0e-09 64.7 40 72.5
PSO674G0020 Papaver somniferum HOM05D000367 ORTHO05D001227 2.6e-09 64.3 40 75.0
Aa31LG1G13350 Aethionema arabicum HOM05D000367 ORTHO05D001227 3.4e-09 63.9 40 70.0
CAN.G96.15 Capsicum annuum HOM05D000367 ORTHO05D001227 3.4e-09 63.9 39 76.9
Lj8A412T9 Lonicera japonica HOM05D000367 ORTHO05D001227 3.4e-09 63.9 40 72.5
Zm00001eb379790 Zea mays HOM05D000367 ORTHO05D001227 3.4e-09 63.9 40 70.0
AL6G33030 Arabidopsis lyrata HOM05D000367 ORTHO05D001227 4.4e-09 63.5 39 71.8
Dinv33548 Davidia involucrata HOM05D000367 ORTHO05D001227 4.4e-09 63.5 40 72.5
SHI50810 Sapria himalayana HOM05D000367 ORTHO05D001227 5.8e-09 63.2 40 67.5
Zm00001eb083700 Zea mays HOM05D000367 ORTHO05D001227 7.6e-09 62.8 39 71.8
A03p10570 Brassica napus HOM05D000367 ORTHO05D001227 9.9e-09 62.4 39 69.2
BraA03t10369Z Brassica rapa HOM05D000367 ORTHO05D001227 9.9e-09 62.4 39 69.2
SGA_v2.0_scaffold92G28134 Striga asiatica HOM05D000367 ORTHO05D001227 9.9e-09 62.4 40 72.5
Zm00001eb016700 Zea mays HOM05D000367 ORTHO05D001227 9.9e-09 62.4 40 70.0
Zm00001eb245890 Zea mays HOM05D000367 ORTHO05D001227 9.9e-09 62.4 40 70.0
Zm00001eb278850 Zea mays HOM05D000367 ORTHO05D001227 9.9e-09 62.4 40 70.0
THA.LOC104810939 Tarenaya hassleriana HOM05D000367 ORTHO05D001227 1.3e-08 62.0 39 71.8
Oeu051472.1 Olea europaea HOM05D000367 ORTHO05D001227 1.7e-08 61.6 40 72.5
BcaB01g04745 Brassica carinata HOM05D000367 ORTHO05D001227 2.2e-08 61.2 39 69.2
Zm00001eb429820 Zea mays HOM05D000367 ORTHO05D001227 2.9e-08 60.8 39 66.7
ECA238G0157 Erigeron canadensis HOM05D000367 ORTHO05D001227 3.7e-08 60.5 40 67.5
Sed0011328 Sechium edule HOM05D000367 ORTHO05D001227 3.7e-08 60.5 35 82.9
CSS0025932 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D001227 4.9e-08 60.1 35 80.0
Duzib106G1093 Durio zibethinus HOM05D000367 ORTHO05D001227 4.9e-08 60.1 35 80.0
Cpa.g.c44794 Carica papaya HOM05D000367 ORTHO05D001227 8.4e-08 59.3 40 65.0
Glyma.07G110200 Glycine max HOM05D000367 ORTHO05D001227 1.9e-07 58.2 40 62.5
EL10Ac7g16279 Beta vulgaris HOM05D000367 ORTHO05D001227 3.2e-07 57.4 35 74.3
Gohir.D05G287500 Gossypium hirsutum HOM05D000367 ORTHO05D001227 3.2e-07 57.4 33 78.8
Gorai.009G302500 Gossypium raimondii HOM05D000367 ORTHO05D001227 3.2e-07 57.4 33 78.8
Oeu005169.1 Olea europaea HOM05D000367 ORTHO05D001227 3.2e-07 57.4 34 76.5
Phvul.010G053900 Phaseolus vulgaris HOM05D000367 ORTHO05D001227 4.1e-07 57.0 40 62.5
THA.LOC104799737 Tarenaya hassleriana HOM05D000367 ORTHO05D001227 4.1e-07 57.0 39 61.5
Lj3g0000875 Lotus japonicus HOM05D000367 ORTHO05D001227 5.4e-07 56.6 40 60.0
CAN.G742.28 Capsicum annuum HOM05D000367 ORTHO05D001227 7.1e-07 56.2 35 74.3
AUR62013716 Chenopodium quinoa HOM05D000367 ORTHO05D001227 7.1e-07 56.2 40 62.5
Sabra10G0190000 Salix brachista HOM05D000367 ORTHO05D001227 9.2e-07 55.8 33 78.8
Aa31LG5G8610 Aethionema arabicum HOM05D000367 ORTHO05D001227 1.2e-06 55.5 40 60.0
arahy.Tifrunner.gnm1.ann1.31U14N Arachis hypogaea HOM05D000367 ORTHO05D001227 1.2e-06 55.5 34 70.6
Os04g0549600 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D001227 1.2e-06 55.5 40 57.5
PSO017G4688 Papaver somniferum HOM05D000367 ORTHO05D001227 1.2e-06 55.5 41 65.9
MD07G1062300 Malus domestica HOM05D000367 ORTHO05D001227 1.6e-06 55.1 36 72.2
HanXRQChr05g0162041 Helianthus annuus HOM05D000367 ORTHO05D001227 2.1e-06 54.7 35 74.3
FvH4_7g05270 Fragaria vesca HOM05D000367 ORTHO05D001227 2.7e-06 54.3 33 75.8
FAN06G0025 Fragaria x ananassa HOM05D000367 ORTHO05D001227 2.7e-06 54.3 33 75.8
Oeu009037.1 Olea europaea HOM05D000367 ORTHO05D001227 2.7e-06 54.3 33 75.8
Os02g0656500 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D001227 2.7e-06 54.3 40 60.0
arahy.Tifrunner.gnm1.ann1.F2PUMD Arachis hypogaea HOM05D000367 ORTHO05D002169 3.5e-06 53.9 34 67.6
MSTRG.21009 Avicennia marina HOM05D000367 ORTHO05D001227 4.6e-06 53.5 33 72.7
Oeu040009.1 Olea europaea HOM05D000367 ORTHO05D001227 4.6e-06 53.5 33 72.7
RcHm_v2.0_Chr4g0428981 Rosa chinensis HOM05D000367 ORTHO05D001227 6.0e-06 53.1 40 55.0
TWI38G1604 Tripterygium wilfordii HOM05D000367 ORTHO05D001227 6.0e-06 53.1 40 57.5
Carub.0006s1970 Capsella rubella HOM05D000367 ORTHO05D001227 7.8e-06 52.8 34 70.6
Ciclev10015385m.g Citrus clementina HOM05D000367 ORTHO05D001227 7.8e-06 52.8 33 78.8
FAN10G1272 Fragaria x ananassa HOM05D000367 ORTHO05D001227 7.8e-06 52.8 34 70.6


User provided reference genes

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