Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 3.7e-21 104.0 54 100.0
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 5.0e-18 93.6 54 88.9
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 8.6e-18 92.8 54 87.0
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 1.5e-17 92.0 54 87.0
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 5.5e-17 90.1 54 85.2
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 5.5e-17 90.1 54 83.3
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 7.2e-17 89.7 54 83.3
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 7.2e-17 89.7 54 81.5
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 7.2e-17 89.7 54 83.3
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 9.5e-17 89.4 54 81.5
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 9.5e-17 89.4 54 83.3
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 9.5e-17 89.4 54 85.2
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 9.5e-17 89.4 54 85.2
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 9.5e-17 89.4 54 83.3
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 9.5e-17 89.4 54 85.2
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 1.2e-16 89.0 54 81.5
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 2.1e-16 88.2 54 85.2
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 2.1e-16 88.2 54 83.3
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.1e-16 88.2 54 83.3
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 2.1e-16 88.2 54 83.3
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 2.8e-16 87.8 54 85.2
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 2.8e-16 87.8 54 85.2
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 2.8e-16 87.8 54 85.2
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 3.6e-16 87.4 54 81.5
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 3.6e-16 87.4 54 81.5
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 3.6e-16 87.4 54 81.5
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 3.6e-16 87.4 54 81.5
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 4.7e-16 87.0 54 83.3
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 8.0e-16 86.3 54 81.5
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 8.0e-16 86.3 52 82.7
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.0e-15 85.9 54 83.3
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 1.0e-15 85.9 54 83.3
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 1.0e-15 85.9 54 79.6
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 1.4e-15 85.5 54 81.5
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.4e-15 85.5 54 81.5
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 1.4e-15 85.5 54 81.5
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 1.8e-15 85.1 54 81.5
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 1.8e-15 85.1 54 79.6
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 1.8e-15 85.1 54 79.6
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.8e-15 85.1 54 81.5
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.8e-15 85.1 54 81.5
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 2.3e-15 84.7 54 81.5
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.3e-15 84.7 54 81.5
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.3e-15 84.7 54 81.5
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.0e-15 84.3 54 79.6
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 4.0e-15 84.0 54 77.8
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 4.0e-15 84.0 54 79.6
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 4.0e-15 84.0 54 79.6
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 5.2e-15 83.6 54 81.5
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 5.2e-15 83.6 54 79.6
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 5.2e-15 83.6 54 79.6
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.2e-15 83.6 54 79.6
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 5.2e-15 83.6 54 79.6
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 5.2e-15 83.6 54 79.6
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 6.8e-15 83.2 54 79.6
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 1.2e-14 82.4 53 77.4
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.5e-14 82.0 56 80.4
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.5e-14 82.0 54 77.8
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 77.8
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 2.0e-14 81.6 56 80.4
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 2.6e-14 81.3 54 77.8
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 2.6e-14 81.3 54 74.1
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 77.8
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 74.1
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 75.9
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 3.4e-14 80.9 52 78.8
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 5.7e-14 80.1 54 74.1
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 5.7e-14 80.1 54 75.9
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.3e-13 79.0 54 75.9
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 1.3e-13 79.0 54 81.5
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 75.9
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 75.9
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 75.9
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 75.9
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 2.8e-13 77.8 54 75.9
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 3.7e-13 77.4 54 74.1
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 3.7e-13 77.4 67 67.2
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 74.1
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 74.1
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 74.1
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 74.1
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 74.1
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 74.1
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 1.4e-12 75.5 54 72.2
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 1.4e-12 75.5 54 72.2
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 1.4e-12 75.5 54 72.2
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 1.4e-12 75.5 42 90.5
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 2.4e-12 74.7 58 74.1
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 2.4e-12 74.7 54 72.2
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 4.1e-12 73.9 54 72.2
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 4.1e-12 73.9 54 72.2
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 4.1e-12 73.9 54 72.2
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 7.0e-12 73.2 54 75.9
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 7.0e-12 73.2 54 75.9
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 7.0e-12 73.2 54 75.9
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 7.0e-12 73.2 54 75.9
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 7.0e-12 73.2 54 70.4
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 9.2e-12 72.8 78 55.1
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 9.2e-12 72.8 54 72.2
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.2e-11 72.4 54 70.4
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 1.2e-11 72.4 48 75.0
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 2.7e-11 71.2 42 88.1
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 3.5e-11 70.9 42 85.7
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 4.5e-11 70.5 58 67.2
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 5.9e-11 70.1 51 72.5
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 7.8e-11 69.7 51 72.5
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 7.8e-11 69.7 50 74.0
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.0e-10 69.3 54 68.5
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 1.3e-10 68.9 38 92.1
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 1.3e-10 68.9 39 87.2
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.3e-10 68.9 59 64.4
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 1.7e-10 68.6 54 75.9
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 2.3e-10 68.2 38 89.5
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.3e-10 68.2 45 77.8
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 2.9e-10 67.8 51 72.5
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 2.9e-10 67.8 54 72.2
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 3.9e-10 67.4 43 79.1
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 3.9e-10 67.4 38 89.5
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 3.9e-10 67.4 38 89.5
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 6.6e-10 66.6 54 68.5
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 6.6e-10 66.6 43 81.4
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 8.6e-10 66.2 54 74.1
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 8.6e-10 66.2 54 74.1
Hma1.2p1_0066F.1_g035670 Hydrangea macrophylla HOM05D004818 ORTHO05D005444 8.6e-10 66.2 49 65.3
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 1.1e-09 65.9 39 87.2
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 1.5e-09 65.5 50 66.0
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 2.5e-09 64.7 38 84.2
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 3.3e-09 64.3 54 72.2
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 3.3e-09 64.3 54 72.2
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 3.3e-09 64.3 54 72.2
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 3.3e-09 64.3 54 72.2
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 4.3e-09 63.9 42 76.2
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 5.6e-09 63.5 38 84.2
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 7.3e-09 63.2 45 77.8
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 9.5e-09 62.8 44 72.7
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 9.5e-09 62.8 52 63.5
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 1.6e-08 62.0 77 51.9
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 1.6e-08 62.0 50 68.0
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 2.1e-08 61.6 40 75.0
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 2.8e-08 61.2 43 74.4
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 2.8e-08 61.2 38 81.6
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 3.6e-08 60.8 39 76.9
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 3.6e-08 60.8 39 76.9
Nitab4.5_0002096g0010 Nicotiana tabacum HOM05D004818 ORTHO05D005444 4.7e-08 60.5 45 71.1
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 6.1e-08 60.1 50 70.0
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 8.0e-08 59.7 51 64.7
Hund00181 Selenicereus undatus HOM05D004818 ORTHO05D005444 8.0e-08 59.7 49 63.3
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 1.0e-07 59.3 38 78.9
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 1.0e-07 59.3 50 66.0
SalBow6G3605 Salvia bowleyana HOM05D004818 ORTHO05D005444 8.9e-07 56.2 39 74.4
Peaxi162Scf00538g00229 Petunia axillaris HOM05D004818 ORTHO05D005444 1.2e-06 55.8 47 61.7
CDE05G2892 Ceratophyllum demersum HOM05D000830 ORTHO05D002187 2.6e-06 54.7 44 63.6
Pp3c1_20190 Physcomitrium patens HOM05D004818 ORTHO05D005444 4.4e-06 53.9 36 77.8
AUR62010366 Chenopodium quinoa HOM05D004818 ORTHO05D005444 9.8e-06 52.8 39 76.9


User provided reference genes

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