Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 4.6e-184 647.9 362 100.0
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 1.1e-124 450.7 357 71.4
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.6e-88 330.5 353 56.1
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 1.2e-83 314.3 359 54.0
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.0e-82 311.2 353 53.8
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 3.3e-81 306.2 352 54.3
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 2.3e-74 283.5 354 46.9
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.0e-74 283.1 362 49.2
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 5.6e-73 278.9 358 47.8
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 6.5e-69 265.4 357 45.7
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.3e-66 257.7 353 43.9
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 1.8e-66 257.3 363 47.7
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 3.0e-66 256.5 353 45.3
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 3.9e-66 256.1 353 43.6
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 7.4e-65 251.9 314 48.7
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 6.3e-64 248.8 354 44.4
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 6.3e-64 248.8 354 44.4
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 3.1e-63 246.5 376 43.9
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.2e-62 244.6 345 47.0
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 1.7e-61 240.7 367 45.2
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.1e-60 238.0 346 43.6
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 3.0e-58 229.9 308 43.8
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 5.7e-57 225.7 348 45.7
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 5.7e-57 225.7 360 42.2
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 3.7e-56 223.0 357 44.3
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 6.9e-55 218.8 363 41.9
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 3.4e-54 216.5 358 41.6
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 5.9e-54 215.7 348 39.9
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 7.7e-54 215.3 362 40.3
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 7.7e-54 215.3 360 41.7
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.7e-53 214.2 346 39.9
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 2.9e-53 213.4 341 42.5
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 5.0e-53 212.6 375 39.2
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.4e-52 211.1 310 42.6
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.9e-52 210.7 369 42.5
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 3.2e-52 209.9 360 38.9
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 9.4e-52 208.4 364 44.5
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 2.7e-51 206.8 347 40.1
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 6.1e-51 205.7 355 37.7
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 1.4e-50 204.5 372 42.2
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 2.3e-50 203.8 372 40.3
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 3.0e-50 203.4 301 44.5
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 5.1e-50 202.6 343 39.4
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 5.1e-50 202.6 401 36.4
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.1e-50 202.6 355 37.7
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 6.7e-50 202.2 358 42.2
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.1e-49 201.4 338 39.3
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.1e-49 201.4 355 37.5
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 4.4e-49 199.5 367 41.4
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 5.7e-49 199.1 210 53.8
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.8e-48 196.8 356 40.7
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 6.3e-48 195.7 349 37.8
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 8.2e-48 195.3 371 38.3
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 8.2e-48 195.3 348 37.4
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 8.2e-48 195.3 362 42.3
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 5.3e-47 192.6 363 40.2
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 6.9e-47 192.2 350 37.7
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 6.9e-47 192.2 363 40.2
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 9.1e-47 191.8 363 40.8
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.5e-46 191.0 368 36.7
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 1.5e-46 191.0 374 37.4
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 4.5e-46 189.5 363 39.1
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.3e-45 188.0 348 37.1
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 1.3e-45 188.0 374 37.4
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 3.8e-45 186.4 375 39.7
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 1.1e-44 184.9 316 41.8
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.2e-43 181.4 349 37.5
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 3.6e-43 179.9 349 37.0
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 4.7e-43 179.5 370 36.5
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 3.0e-42 176.8 350 35.1
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 5.2e-42 176.0 348 37.9
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.1e-41 174.9 346 36.4
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 1.1e-41 174.9 349 37.2
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 2.6e-41 173.7 348 37.9
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 3.3e-41 173.3 340 37.1
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 9.7e-41 171.8 348 37.6
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 1.7e-40 171.0 302 42.1
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 2.8e-40 170.2 349 36.1
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 6.3e-40 169.1 353 35.7
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.4e-39 167.9 353 35.4
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 1.4e-39 167.9 302 40.1
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 2.4e-39 167.2 349 37.0
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 9.1e-39 165.2 346 35.5
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.6e-38 164.5 347 37.2
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 2.6e-38 163.7 351 34.8
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 2.6e-38 163.7 349 34.7
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 3.5e-38 163.3 355 35.8
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.0e-37 161.8 344 37.8
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 1.0e-37 161.8 361 37.1
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.1e-36 158.3 348 37.9
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.5e-36 157.9 346 37.6
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.9e-36 157.5 345 38.0
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 4.2e-36 156.4 356 35.4
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 5.5e-36 156.0 237 40.1
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 5.2e-34 149.4 293 36.2
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 8.8e-34 148.7 377 32.1
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.6e-33 147.1 345 38.6
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 3.3e-33 146.7 377 32.6
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 4.8e-32 142.9 302 36.1
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 8.2e-32 142.1 360 32.2
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.4e-31 141.4 298 35.6
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 7.0e-31 139.0 373 33.5
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 9.1e-31 138.7 183 45.4
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 7.7e-30 135.6 221 34.8
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.7e-29 134.4 289 35.6
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 2.2e-29 134.0 368 35.9
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.1e-28 131.7 323 34.7
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.1e-28 131.7 345 36.5
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 2.5e-28 130.6 337 30.9
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 9.4e-28 128.6 350 34.6
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.8e-26 124.4 291 35.7
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 5.2e-26 122.9 297 31.6
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 8.8e-26 122.1 319 35.4
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.7e-24 117.9 357 27.7
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.7e-24 117.9 286 30.4
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 6.3e-24 115.9 340 33.2
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 6.3e-24 115.9 226 32.7
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 7.0e-23 112.5 344 31.4
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 3.5e-22 110.2 359 32.0
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 4.5e-22 109.8 279 34.8
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 4.5e-22 109.8 358 29.6
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.3e-21 108.2 220 36.4
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.5e-20 104.8 352 31.0
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 2.1e-19 100.9 224 34.4
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 2.1e-19 100.9 169 42.6
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.4e-18 98.2 376 30.3
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 5.7e-17 92.8 187 31.6
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 2.2e-16 90.9 274 32.5
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 6.3e-16 89.4 368 28.5
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 4.1e-15 86.7 389 24.7
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 9.2e-15 85.5 216 26.9
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 3.8e-13 80.1 97 42.3
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 8.6e-13 79.0 369 27.1
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 8.0e-11 72.4 319 23.2
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 6.8e-10 69.3 210 33.3
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 9.8e-09 65.5 214 27.6
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 1.7e-08 64.7 212 24.5
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.7e-08 63.5 144 35.4
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 1.9e-07 61.2 147 32.0
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 7.0e-07 59.3 95 34.7
Sabra05G0018600 Salix brachista HOM05D028329 ORTHO05D005897 9.2e-07 58.9 66 50.0
Sabra12G0048900 Salix brachista HOM05D028329 ORTHO05D005897 9.2e-07 58.9 66 50.0
Sabra16G0239000 Salix brachista HOM05D028329 ORTHO05D005897 9.2e-07 58.9 66 50.0
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 1.2e-06 58.5 56 50.0
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 4.6e-06 56.6 257 25.3


User provided reference genes

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