Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 1.3e-260 902.5 438 100.0
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 8.8e-230 800.0 429 88.3
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.7e-185 652.9 444 71.2
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 1.1e-182 643.7 438 70.1
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.4e-182 643.3 437 70.9
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 1.5e-181 639.8 440 70.7
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 5.8e-181 637.9 437 69.3
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 1.7e-180 636.3 440 69.3
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 2.9e-180 635.6 445 69.9
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 1.7e-177 626.3 445 67.9
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 1.9e-176 622.9 434 67.5
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 1.8e-174 616.3 439 67.2
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 5.8e-173 611.3 437 67.0
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 9.9e-173 610.5 437 67.0
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 6.4e-172 607.8 436 67.0
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.9e-171 606.3 437 66.4
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 7.1e-171 604.4 433 67.9
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 1.2e-170 603.6 437 66.4
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 1.6e-170 603.2 437 67.3
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.3e-169 599.4 435 66.9
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 6.6e-169 597.8 440 65.7
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 1.9e-168 596.3 435 66.4
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 3.3e-168 595.5 429 67.1
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 3.3e-168 595.5 442 65.6
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 6.2e-167 591.3 438 64.8
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 6.2e-167 591.3 435 66.4
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 5.3e-166 588.2 444 65.1
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 2.0e-165 586.3 437 65.7
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 2.2e-164 582.8 435 64.8
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 8.4e-164 580.9 429 66.0
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 3.2e-163 578.9 441 65.1
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 1.2e-162 577.0 427 65.1
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 3.0e-161 572.4 442 63.8
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 5.1e-161 571.6 441 64.6
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 6.7e-161 571.2 439 62.0
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 5.6e-160 568.2 434 64.1
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 1.6e-159 566.6 424 64.9
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.7e-159 565.5 435 62.5
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 3.7e-159 565.5 435 62.8
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 1.1e-158 563.9 436 62.8
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 2.0e-157 559.7 434 62.9
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 2.6e-157 559.3 433 63.5
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 4.5e-157 558.5 434 62.9
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 5.8e-157 558.1 427 65.3
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 1.3e-156 557.0 422 64.2
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.3e-156 557.0 422 63.3
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 2.2e-156 556.2 438 61.9
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.2e-156 556.2 452 60.4
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 6.4e-156 554.7 438 63.2
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.2e-155 552.4 435 61.8
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 3.2e-155 552.4 426 62.7
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 3.2e-155 552.4 431 60.3
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 4.2e-155 552.0 347 73.8
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 7.1e-155 551.2 436 62.8
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 3.5e-154 548.9 422 62.8
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 3.5e-154 548.9 456 60.1
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 3.5e-154 548.9 426 62.7
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 6.0e-154 548.1 430 62.6
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 6.0e-154 548.1 430 62.6
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 6.0e-154 548.1 430 62.6
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 1.0e-153 547.4 433 60.7
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 1.8e-153 546.6 434 60.8
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 1.8e-153 546.6 437 60.9
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 3.9e-153 545.4 426 62.2
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 5.1e-153 545.0 434 61.3
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 5.1e-153 545.0 440 60.5
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 6.7e-153 544.7 413 64.9
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 8.7e-153 544.3 428 63.6
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 1.1e-152 543.9 442 60.0
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 2.5e-152 542.7 423 62.2
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 2.5e-152 542.7 436 60.8
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 3.3e-152 542.3 430 61.6
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 4.3e-152 542.0 430 62.3
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 1.6e-151 540.0 428 63.1
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 2.1e-151 539.7 417 63.3
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 2.8e-151 539.3 428 62.6
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 2.8e-151 539.3 432 62.7
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 2.8e-151 539.3 432 62.7
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 2.8e-151 539.3 432 62.7
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 3.7e-151 538.9 351 70.9
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 4.8e-151 538.5 426 62.2
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 4.8e-151 538.5 426 60.8
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 8.2e-151 537.7 426 62.2
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 1.1e-150 537.3 442 60.4
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 1.4e-150 537.0 389 66.1
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 2.4e-150 536.2 389 66.3
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 3.1e-150 535.8 442 61.3
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 4.0e-150 535.4 442 60.2
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 6.9e-150 534.6 431 61.5
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 1.5e-149 533.5 419 62.1
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 1.0e-148 530.8 418 63.2
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.3e-148 530.4 425 61.9
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 2.2e-148 529.6 341 71.3
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 6.5e-148 528.1 421 61.8
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 8.4e-148 527.7 417 62.4
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 2.5e-147 526.2 418 62.0
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 3.2e-147 525.8 433 60.3
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 7.1e-147 524.6 435 60.7
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 9.3e-147 524.2 341 71.0
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 1.8e-145 520.0 439 58.5
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 3.9e-145 518.8 450 56.9
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 5.1e-145 518.5 421 62.0
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 1.5e-144 516.9 414 61.8
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 1.5e-144 516.9 433 58.4
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 1.9e-144 516.5 426 59.6
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 2.5e-144 516.2 426 59.9
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 1.6e-143 513.5 428 59.3
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 1.4e-142 510.4 459 57.3
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 2.4e-142 509.6 420 61.2
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 6.9e-142 508.1 414 61.1
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 1.5e-141 506.9 434 60.6
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 1.5e-141 506.9 424 58.7
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 2.0e-141 506.5 345 68.1
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 4.2e-139 498.8 428 57.5
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 2.7e-138 496.1 348 65.8
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 7.9e-138 494.6 434 56.9
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 7.9e-138 494.6 431 58.5
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 1.4e-137 493.8 420 59.3
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 7.4e-136 488.0 415 59.0
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 1.7e-135 486.9 422 58.1
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 1.7e-135 486.9 429 58.0
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 2.2e-135 486.5 422 58.5
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 2.2e-135 486.5 427 56.2
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 1.1e-134 484.2 423 57.2
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.8e-134 483.4 418 53.6
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 3.1e-134 482.6 332 67.8
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 9.1e-134 481.1 360 66.7
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 1.0e-132 477.6 431 55.7
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 5.0e-132 475.3 419 56.1
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 5.5e-131 471.9 415 56.9
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 7.2e-131 471.5 422 55.9
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 9.4e-131 471.1 347 62.5
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 2.1e-130 469.9 457 54.7
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 2.9e-124 449.5 293 69.3
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 9.4e-123 444.5 342 59.9
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.6e-122 443.7 425 52.0
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 5.0e-116 422.2 341 56.9
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.5e-115 419.9 341 56.9
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 8.0e-114 414.8 250 74.4
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 5.7e-112 408.7 440 50.5
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 2.2e-111 406.8 242 76.0
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 4.8e-111 405.6 340 56.5
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.3e-108 397.5 374 53.5
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 6.5e-108 395.2 250 71.2
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 4.2e-107 392.5 341 54.8
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 9.4e-107 391.3 289 67.1
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 6.8e-105 385.2 365 50.1
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 1.3e-103 380.9 305 58.7
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.1e-102 377.9 344 53.2
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 7.0e-102 375.2 340 52.1
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 3.8e-100 369.4 367 47.7
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 5.5e-99 365.5 365 48.8
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 2.0e-96 357.1 338 50.6
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 2.6e-96 356.7 244 66.8
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 1.2e-93 347.8 341 49.3
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 5.0e-92 342.4 349 48.7
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 6.6e-92 342.0 340 48.2
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 1.1e-86 324.7 237 62.9
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 1.5e-83 314.3 385 43.9
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 5.6e-83 312.4 421 40.6
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 4.4e-80 302.8 237 58.6
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 3.5e-77 293.1 306 47.4
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.0e-76 291.6 346 41.3
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.1e-75 288.1 340 41.8
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 3.3e-75 286.6 347 40.1
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 5.6e-75 285.8 341 43.1
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 4.7e-74 282.7 342 41.5
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 3.4e-72 276.6 240 50.4
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.1e-67 261.5 347 39.5
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 4.3e-59 233.0 352 36.4
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 2.4e-41 174.1 152 58.6
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 1.1e-35 155.2 415 27.7
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 2.5e-35 154.1 152 50.7
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.7e-31 141.4 127 59.8
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 2.0e-24 117.9 85 60.0
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 4.6e-21 106.7 100 48.0
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 4.3e-19 100.1 79 48.1
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.8e-18 97.4 120 38.3
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.4e-14 85.1 86 44.2
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.3e-10 72.0 87 44.8
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.2e-10 71.2 68 38.2
Prupe.6G163800 Prunus persica HOM05D003764 ORTHO05D335910 3.8e-07 60.5 47 61.7
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.9e-06 58.2 35 74.3


User provided reference genes

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