Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 3.6e-138 495.0 257 100.0
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 2.3e-76 289.7 210 77.6
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 1.2e-66 257.3 209 66.5
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 8.1e-66 254.6 207 65.7
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 1.1e-65 254.2 209 66.5
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 1.4e-62 243.8 210 67.1
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 6.0e-61 238.4 213 66.2
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 1.0e-60 237.7 211 62.1
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 1.0e-60 237.7 212 64.6
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 1.1e-59 234.2 212 61.8
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 3.3e-59 232.6 210 61.9
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 9.6e-59 231.1 212 64.6
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 2.1e-58 229.9 207 61.8
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 4.8e-58 228.8 208 62.5
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 8.1e-58 228.0 215 61.4
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 4.0e-57 225.7 210 62.9
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 5.3e-57 225.3 208 60.6
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 1.2e-56 224.2 207 59.9
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 2.0e-56 223.4 213 62.0
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 2.6e-56 223.0 211 61.6
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 2.2e-55 219.9 215 59.5
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 6.4e-55 218.4 211 62.6
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 7.1e-54 214.9 206 63.1
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 4.6e-53 212.2 206 62.6
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 4.6e-53 212.2 206 62.6
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 4.6e-53 212.2 213 60.6
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 1.3e-52 210.7 216 59.3
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 3.0e-52 209.5 211 58.8
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 5.1e-52 208.8 213 61.5
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 8.7e-52 208.0 217 59.0
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 1.5e-51 207.2 210 56.2
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 3.3e-51 206.1 210 58.6
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 4.3e-51 205.7 215 60.0
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 1.6e-50 203.8 211 56.9
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 2.8e-50 203.0 183 63.9
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 3.7e-50 202.6 213 60.1
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 4.8e-50 202.2 213 60.1
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 8.1e-50 201.4 212 60.4
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.1e-49 201.1 215 57.7
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 3.1e-49 199.5 208 59.1
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 2.6e-48 196.4 215 56.7
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 9.9e-48 194.5 219 58.4
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 6.4e-47 191.8 220 54.5
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 8.4e-47 191.4 203 59.1
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 2.4e-46 189.9 213 57.7
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 5.5e-46 188.7 213 54.5
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 5.5e-46 188.7 203 58.6
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 4.6e-45 185.7 211 55.0
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 1.3e-44 184.1 186 58.6
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 2.3e-44 183.3 208 54.8
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 6.7e-44 181.8 212 55.2
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 1.9e-43 180.3 210 54.8
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 9.6e-43 177.9 203 54.7
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 9.6e-43 177.9 204 54.9
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 2.1e-42 176.8 218 56.4
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 8.2e-42 174.9 210 51.9
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 8.2e-42 174.9 210 51.9
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 3.1e-41 172.9 217 52.1
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 4.0e-41 172.6 211 52.1
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 4.0e-41 172.6 218 50.9
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 5.3e-41 172.2 209 53.1
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 1.2e-40 171.0 214 54.2
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 1.3e-39 167.5 205 52.2
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 1.7e-39 167.2 216 50.9
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 2.2e-39 166.8 218 50.5
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 3.8e-39 166.0 206 50.5
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 4.2e-38 162.5 218 51.8
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 1.2e-37 161.0 225 50.2
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 2.1e-37 160.2 210 51.0
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 2.7e-37 159.8 221 53.4
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 7.9e-37 158.3 222 50.5
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 7.9e-37 158.3 209 49.3
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 7.9e-37 158.3 206 52.4
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 3.9e-36 156.0 216 50.0
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 6.7e-36 155.2 194 53.6
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 1.1e-35 154.5 210 50.5
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 3.3e-35 152.9 219 50.2
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 4.3e-35 152.5 268 46.3
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 3.7e-34 149.4 210 48.6
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 3.7e-34 149.4 212 47.2
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 4.1e-33 146.0 149 60.4
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 1.5e-32 144.1 219 49.3
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 3.4e-32 142.9 204 48.0
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 1.0e-31 141.4 214 46.3
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 3.8e-31 139.4 209 46.4
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 5.0e-31 139.0 205 46.3
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 6.5e-31 138.7 180 51.7
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 6.5e-31 138.7 180 51.7
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 1.9e-30 137.1 216 45.8
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 3.2e-30 136.3 214 47.2
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 3.2e-30 136.3 195 47.7
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 1.6e-29 134.0 221 45.2
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 2.1e-29 133.7 124 61.3
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.7e-29 133.3 210 44.8
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 1.0e-28 131.3 185 47.6
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 1.8e-28 130.6 224 42.4
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 2.3e-28 130.2 211 45.5
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 2.3e-28 130.2 214 43.5
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 3.0e-28 129.8 217 46.1
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 6.7e-28 128.6 205 45.4
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 6.7e-28 128.6 205 45.4
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 6.7e-28 128.6 185 46.5
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 2.5e-27 126.7 194 44.8
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 2.5e-27 126.7 216 44.0
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 3.3e-27 126.3 213 43.2
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 4.8e-26 122.5 211 45.0
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 8.2e-26 121.7 177 44.6
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.4e-25 120.9 206 44.2
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 3.1e-25 119.8 206 43.7
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 3.1e-25 119.8 207 44.0
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 3.4e-24 116.3 209 43.1
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 6.5e-23 112.1 234 39.3
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 1.9e-22 110.5 172 48.3
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 2.7e-21 106.7 183 44.3
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 1.4e-20 104.4 195 42.6
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 1.5e-19 100.9 79 65.8
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.0e-19 100.5 106 55.7
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 3.1e-17 93.2 179 41.3
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 5.3e-17 92.4 102 52.0
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 2.2e-15 87.0 166 40.4
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 6.5e-15 85.5 164 42.7
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 6.5e-15 85.5 201 40.3
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 4.2e-14 82.8 196 37.8
Thecc.06G128900 Theobroma cacao HOM05D005571 ORTHO05D006919 5.5e-14 82.4 74 62.2
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 1.2e-13 81.3 174 41.4
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 2.1e-13 80.5 102 44.1
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 4.7e-13 79.3 174 39.7
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 4.7e-13 79.3 174 39.7
Thecc.04G308600 Theobroma cacao HOM05D005571 ORTHO05D006919 1.0e-12 78.2 74 60.8
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 1.8e-12 77.4 77 59.7
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 1.8e-12 77.4 77 59.7
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 6.7e-12 75.5 68 61.8
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 8.8e-12 75.1 248 36.7
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 3.3e-11 73.2 186 37.1
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 1.3e-10 71.2 115 47.8
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 1.3e-10 71.2 115 47.8
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 4.8e-10 69.3 210 32.9
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 2.4e-09 67.0 124 47.6
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 2.4e-09 67.0 124 47.6
Zm00001eb320020 Zea mays HOM05D033341 ORTHO05D036979 1.0e-07 61.6 264 31.1
ECA238G3056 Erigeron canadensis HOM05D002204 ORTHO05D002875 3.2e-06 56.6 103 41.7


User provided reference genes

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