Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1689.1 806 100.0
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1392.9 806 82.4
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1356.7 803 80.2
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1356.7 806 79.8
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1343.9 803 79.1
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1321.2 806 77.7
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1319.3 806 76.9
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1318.9 807 76.8
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1309.3 806 76.1
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1306.2 806 76.4
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1288.5 806 75.6
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1287.3 805 76.4
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1281.5 802 74.9
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1280.8 806 74.3
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1279.2 806 74.8
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1275.8 806 74.4
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1271.5 818 74.3
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1265.4 822 71.8
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1257.7 806 73.1
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1256.9 841 71.5
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1255.4 806 74.2
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1252.3 806 74.9
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1250.3 814 73.6
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1247.6 806 73.8
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1247.3 803 73.6
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1243.4 806 73.4
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1236.9 806 72.2
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1234.2 841 69.4
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1233.0 806 73.3
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1224.5 888 68.5
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1224.2 806 71.6
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1213.7 806 70.5
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1211.8 806 70.8
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1209.1 836 69.9
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1189.5 806 69.7
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1184.1 807 69.3
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1181.4 806 69.1
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1180.2 807 69.9
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1179.5 757 72.8
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1177.2 807 69.3
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1176.4 806 68.6
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1176.4 807 69.4
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1167.9 805 69.1
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1167.1 856 66.0
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1165.6 804 68.0
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1162.9 803 68.2
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1162.5 807 68.6
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1160.6 773 70.6
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1152.9 840 65.4
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1152.5 805 68.1
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1152.1 809 67.7
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1151.7 814 67.4
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1149.0 806 67.6
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 0.0e+00 1146.7 806 67.2
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1146.0 801 67.9
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1144.8 807 66.8
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1142.1 802 68.1
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1140.6 805 66.6
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1140.2 802 67.2
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1139.8 801 67.3
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1135.9 809 67.7
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1135.9 807 67.4
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 0.0e+00 1135.2 806 66.3
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1133.6 806 67.7
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 0.0e+00 1131.7 806 66.4
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1130.5 805 66.3
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 0.0e+00 1130.2 807 67.7
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1129.0 804 67.7
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1127.5 849 62.9
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1121.7 804 66.9
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 0.0e+00 1121.7 806 65.8
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1116.7 804 66.4
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1114.0 809 66.9
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1114.0 809 66.9
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1108.2 807 66.5
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 0.0e+00 1102.4 788 66.2
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 0.0e+00 1100.9 847 63.5
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 0.0e+00 1092.8 855 62.5
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1087.8 801 65.0
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 0.0e+00 1077.4 807 66.3
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 1.9e-302 1042.3 807 63.2
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.5e-302 1042.0 805 61.4
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 9.3e-302 1040.0 712 70.8
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 3.0e-300 1035.0 806 61.7
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 7.4e-299 1030.4 807 60.7
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 2.2e-290 1002.3 719 67.7
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 7.9e-285 983.8 731 65.3
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 9.1e-273 943.7 603 75.3
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 5.7e-267 924.5 614 72.0
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 2.7e-261 905.6 598 70.7
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.5e-254 882.5 803 53.9
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 2.3e-223 779.6 616 60.4
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 1.8e-220 770.0 609 62.9
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 1.2e-213 747.3 837 47.6
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 3.6e-213 745.7 375 97.1
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 8.1e-197 691.4 830 45.4
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 1.3e-191 674.1 832 43.6
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 1.3e-181 641.0 460 67.8
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.1e-177 627.9 537 58.1
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.3e-174 615.9 457 63.7
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 4.5e-147 526.2 580 46.7
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 5.0e-146 522.7 458 54.6
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 3.0e-143 513.5 446 55.4
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.3e-141 508.1 414 62.6
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.3e-129 466.5 315 69.5
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.6e-126 457.2 468 50.4
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 2.7e-115 420.6 340 64.7
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 1.3e-93 348.6 193 78.2
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 4.9e-93 346.7 237 73.8
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 6.6e-90 336.3 306 58.2
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.6e-78 297.7 279 53.8
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 6.9e-71 273.1 146 80.1
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 2.0e-70 271.6 149 82.6
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 2.6e-70 271.2 494 36.0
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 1.8e-55 221.9 123 73.2
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 1.4e-52 212.2 844 26.1
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 5.1e-50 203.8 195 47.2
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 1.4e-47 195.7 147 57.1
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.7e-45 188.7 193 52.8
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 9.1e-39 166.4 93 74.2
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 1.8e-31 142.1 84 73.8
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 5.4e-23 114.0 54 83.3
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.6e-19 102.4 197 34.0
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 1.9e-12 79.0 80 48.8
BcaC01g06849 Brassica carinata HOM05D001597 ORTHO05D001512 1.3e-08 66.2 228 28.5
C03p38940 Brassica napus HOM05D001597 ORTHO05D001512 1.3e-08 66.2 228 28.5
BolC3t16166H Brassica oleracea HOM05D001597 ORTHO05D001512 1.3e-08 66.2 228 28.5
A03p31920 Brassica napus HOM05D001597 ORTHO05D001512 1.8e-07 62.4 221 28.5
BraA03t12364Z Brassica rapa HOM05D001597 ORTHO05D001512 1.8e-07 62.4 221 28.5
Gohir.A11G093600 Gossypium hirsutum HOM05D001597 ORTHO05D001512 1.8e-07 62.4 243 28.8
Gorai.007G104800 Gossypium raimondii HOM05D001597 ORTHO05D001512 2.4e-07 62.0 242 28.1
Os06g0251200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.2e-07 61.6 201 26.9
Gohir.D11G098600 Gossypium hirsutum HOM05D001597 ORTHO05D001512 4.1e-07 61.2 242 28.1
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 4.1e-07 61.2 153 28.8
Sed0005870 Sechium edule HOM05D001597 ORTHO05D001512 5.4e-07 60.8 242 26.9
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 7.0e-07 60.5 52 53.8
Sopen12g028640 Solanum pennellii HOM05D001597 ORTHO05D001512 1.2e-06 59.7 169 29.6
PGSC0003DMG400004985 Solanum tuberosum HOM05D001597 ORTHO05D001512 1.2e-06 59.7 221 28.5
CsaV3_6G000990 Cucumis sativus L. HOM05D001597 ORTHO05D001512 2.0e-06 58.9 221 28.1
PSO478G0932 Papaver somniferum HOM05D002322 ORTHO05D002536 2.0e-06 58.9 189 27.5
HanXRQChr03g0077751 Helianthus annuus HOM05D002322 ORTHO05D002536 2.7e-06 58.5 346 25.1
HanXRQChr15g0464791 Helianthus annuus HOM05D002322 ORTHO05D002536 2.7e-06 58.5 346 25.1
Solyc12g056130.2 Solanum lycopersicum HOM05D001597 ORTHO05D001512 2.7e-06 58.5 169 29.0
TPR.G4735 Trifolium pratense HOM05D001597 ORTHO05D001512 2.7e-06 58.5 242 28.1
CiPaw.01G070500 Carya illinoinensis HOM05D001597 ORTHO05D001512 3.5e-06 58.2 271 27.7
MELO3C006051.2 Cucumis melo HOM05D001597 ORTHO05D001512 3.5e-06 58.2 229 28.8
QL04p059786 Quercus lobata HOM05D001597 ORTHO05D001512 3.5e-06 58.2 243 28.8
ClCG05G001010 Citrullus lanatus HOM05D001597 ORTHO05D001512 4.6e-06 57.8 229 28.8
CsaV3_3G008330 Cucumis sativus L. HOM05D001597 ORTHO05D001512 4.6e-06 57.8 229 28.8
Os08g0523700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.6e-06 57.8 145 26.9
Atru.chr5.607 Acer truncatum HOM05D001597 ORTHO05D001512 5.9e-06 57.4 226 27.4
Ah.12g052180 Amaranthus hybridus HOM05D001597 ORTHO05D001512 5.9e-06 57.4 167 31.1
CiPaw.02G037700 Carya illinoinensis HOM05D001597 ORTHO05D001512 5.9e-06 57.4 220 26.8
Os08g0227400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.9e-06 57.4 163 25.8
PSO017G3258 Papaver somniferum HOM05D002322 ORTHO05D002536 5.9e-06 57.4 189 26.5
Migut.E01225 Erythranthe guttata HOM05D001597 ORTHO05D001512 7.8e-06 57.0 223 29.1
HanXRQChr16g0523421 Helianthus annuus HOM05D001597 ORTHO05D001512 7.8e-06 57.0 287 24.7
Medtr8g028190 Medicago truncatula HOM05D001597 ORTHO05D001512 7.8e-06 57.0 243 28.0
Oeu063055.1 Olea europaea HOM05D001597 ORTHO05D001512 7.8e-06 57.0 220 26.8


User provided reference genes

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