Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.4e-95 352.8 168 100.0
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 1.1e-79 300.1 168 82.1
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 1.9e-79 299.3 168 82.1
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 3.9e-77 291.6 169 80.5
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 2.1e-75 285.8 167 77.8
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 2.1e-75 285.8 167 77.8
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 2.8e-75 285.4 168 76.8
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 2.8e-75 285.4 168 76.2
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 4.8e-75 284.6 167 76.6
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.1e-74 283.5 168 76.2
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 1.4e-74 283.1 168 75.6
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.4e-74 283.1 168 76.8
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.4e-74 283.1 168 75.0
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.8e-74 282.7 168 75.0
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 2.4e-74 282.3 170 77.6
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 2.4e-74 282.3 168 76.8
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 3.1e-74 282.0 168 74.4
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.1e-74 282.0 168 74.4
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.1e-74 282.0 168 74.4
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 3.4e-73 278.5 168 78.0
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 1.7e-72 276.2 163 75.5
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 2.5e-71 272.3 168 73.2
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 3.2e-71 271.9 168 73.8
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 9.3e-71 270.4 168 72.6
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 1.6e-70 269.6 168 75.6
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 4.6e-70 268.1 168 73.8
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 6.0e-70 267.7 172 72.7
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 6.0e-70 267.7 170 71.8
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 7.9e-70 267.3 168 70.2
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.8e-69 266.2 168 70.8
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 2.3e-69 265.8 168 68.5
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 3.0e-69 265.4 168 70.8
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 3.9e-69 265.0 168 73.2
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.5e-68 263.1 168 71.4
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.5e-68 263.1 137 89.1
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 1.9e-68 262.7 168 72.0
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 2.5e-68 262.3 168 69.6
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 7.4e-68 260.8 170 69.4
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 2.1e-67 259.2 170 68.2
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 2.1e-67 259.2 168 70.8
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 2.1e-67 259.2 168 69.0
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 6.3e-67 257.7 170 67.6
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 1.5e-65 253.1 170 71.2
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 7.6e-65 250.8 168 69.6
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 1.0e-64 250.4 168 69.0
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.3e-64 250.0 168 69.6
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.3e-64 250.0 168 67.9
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 2.9e-64 248.8 170 65.3
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 2.9e-64 248.8 179 62.0
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 5.0e-64 248.1 153 75.8
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 8.4e-64 247.3 168 66.1
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.4e-63 246.5 168 65.5
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.1e-62 242.7 168 64.9
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 66.1
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 4.6e-62 241.5 141 80.1
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.3e-61 240.0 168 64.3
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 3.0e-61 238.8 168 63.1
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 5.1e-61 238.0 169 66.9
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 6.7e-61 237.7 168 63.1
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 8.7e-61 237.3 168 62.5
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.1e-60 236.9 168 63.1
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.1e-60 236.9 205 56.6
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 1.5e-60 236.5 168 64.3
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 62.5
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 62.5
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 62.5
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 62.5
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 3.3e-60 235.3 184 62.5
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 3.3e-60 235.3 168 60.7
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 4.3e-60 235.0 168 63.1
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 7.4e-60 234.2 168 62.5
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 7.4e-60 234.2 168 63.1
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 9.7e-60 233.8 168 63.1
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.3e-59 233.4 168 63.1
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.6e-59 233.0 168 61.9
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.6e-59 233.0 168 61.9
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.2e-59 232.6 168 61.9
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.2e-59 232.6 168 61.9
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 4.8e-59 231.5 168 62.5
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 6.3e-59 231.1 168 62.5
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 6.3e-59 231.1 168 62.5
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 6.3e-59 231.1 168 61.3
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 8.2e-59 230.7 168 61.3
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.1e-58 230.3 205 55.6
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.1e-58 230.3 169 64.5
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.1e-58 230.3 169 64.5
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 1.8e-58 229.6 173 63.0
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 2.4e-58 229.2 201 55.7
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 6.9e-58 227.6 169 62.7
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 6.9e-58 227.6 169 62.7
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 6.9e-58 227.6 168 61.9
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 9.0e-58 227.3 168 60.7
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 1.2e-57 226.9 193 58.5
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 60.7
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 7.7e-57 224.2 168 60.1
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.0e-56 223.8 168 60.7
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.0e-56 223.8 168 60.7
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 1.0e-56 223.8 182 56.0
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.7e-56 223.0 168 60.7
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 1.7e-56 223.0 196 53.6
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 2.2e-56 222.6 169 60.4
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 2.9e-56 222.2 172 59.3
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 2.9e-56 222.2 168 60.1
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 3.8e-56 221.9 155 61.3
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 1.1e-55 220.3 189 54.0
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 7.2e-55 217.6 237 48.1
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 7.2e-55 217.6 168 58.3
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 9.4e-55 217.2 188 55.3
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 9.4e-55 217.2 168 58.3
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 58.3
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 8.8e-53 210.7 190 54.7
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 1.3e-51 206.8 188 52.1
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.1e-50 203.8 125 69.6
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.1e-50 203.8 190 52.6
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 2.4e-50 202.6 168 60.7
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 3.1e-50 202.2 167 59.3
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 2.2e-48 196.1 140 65.7
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 1.4e-47 193.4 151 60.3
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 1.2e-46 190.3 169 52.7
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.4e-42 176.8 145 54.5
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 1.8e-42 176.4 168 55.4
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 4.1e-42 175.3 169 49.7
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 9.1e-42 174.1 169 49.1
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 1.2e-41 173.7 111 68.5
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 2.9e-40 169.1 125 65.6
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 3.8e-40 168.7 174 49.4
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.6e-38 163.3 186 46.2
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 4.0e-37 158.7 104 64.4
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 1.1e-36 157.1 168 51.2
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.5e-36 156.8 173 45.7
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.8e-34 149.8 97 74.2
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.0e-33 146.4 101 66.3
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 1.4e-29 133.7 169 39.6
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 8.8e-29 131.0 162 45.1
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 2.6e-28 129.4 171 38.6
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 2.8e-27 125.9 142 42.3
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 4.8e-27 125.2 184 36.4
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.1e-26 124.0 107 54.2
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 9.1e-26 120.9 163 38.0
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 1.3e-24 117.1 112 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 4.2e-23 112.1 171 35.1
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 1.2e-22 110.5 169 32.5
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 2.3e-21 106.3 98 46.9
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 9.2e-18 94.4 67 64.2
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.5e-15 87.0 60 63.3
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 6.6e-08 61.6 141 31.2


User provided reference genes

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