Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 8.2e-111 403.7 195 100.0
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.3e-87 326.6 183 85.2
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 7.0e-86 320.9 169 89.9
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 8.5e-84 313.9 189 80.4
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.5e-83 313.2 189 80.4
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 3.4e-80 302.0 174 81.6
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 3.4e-80 302.0 189 78.8
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 7.5e-80 300.8 190 80.0
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 2.2e-79 299.3 184 77.7
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 5.4e-78 294.7 222 69.8
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 7.0e-78 294.3 177 79.7
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 9.1e-78 293.9 178 78.1
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.2e-77 293.5 190 77.4
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 2.0e-77 292.7 190 75.8
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 2.0e-77 292.7 163 83.4
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 3.5e-77 292.0 172 80.8
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 4.5e-77 291.6 190 74.7
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 4.5e-77 291.6 189 77.2
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 4.5e-77 291.6 168 80.4
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 5.9e-77 291.2 189 77.8
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.9e-77 291.2 178 77.5
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 7.7e-77 290.8 188 76.6
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 7.7e-77 290.8 189 75.1
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 7.7e-77 290.8 189 75.1
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 1.7e-76 289.7 192 74.5
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 2.3e-76 289.3 168 79.8
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 2.3e-76 289.3 191 73.3
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.9e-76 288.9 189 75.1
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 3.8e-76 288.5 192 74.5
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 8.6e-76 287.3 189 75.1
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.5e-75 286.6 148 87.8
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.9e-75 286.2 180 74.4
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.5e-75 285.8 168 79.2
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 1.6e-74 283.1 170 77.1
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 2.1e-74 282.7 147 87.8
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.8e-74 282.3 192 70.8
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 3.6e-74 282.0 190 72.6
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 3.6e-74 282.0 187 71.1
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 4.7e-74 281.6 191 72.8
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 4.7e-74 281.6 178 73.6
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 6.1e-74 281.2 195 71.8
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 6.1e-74 281.2 147 87.1
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 8.0e-74 280.8 150 86.7
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 8.0e-74 280.8 150 86.7
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 8.0e-74 280.8 173 76.3
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 8.0e-74 280.8 146 87.0
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.0e-73 280.4 154 83.1
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.0e-73 280.4 190 72.1
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.0e-73 280.4 151 85.4
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.0e-73 280.4 145 86.9
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 1.0e-73 280.4 177 76.8
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.4e-73 280.0 156 80.8
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.4e-73 280.0 156 80.8
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 1.8e-73 279.6 168 78.6
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 2.3e-73 279.3 191 71.7
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 2.3e-73 279.3 169 77.5
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 2.3e-73 279.3 235 63.0
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 2.3e-73 279.3 192 69.8
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 3.0e-73 278.9 160 81.2
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 4.0e-73 278.5 146 86.3
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 5.2e-73 278.1 192 69.8
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 6.8e-73 277.7 193 71.5
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 6.8e-73 277.7 157 78.3
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 6.8e-73 277.7 170 75.9
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 6.8e-73 277.7 175 77.7
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.5e-72 276.6 175 75.4
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.5e-72 276.6 183 73.2
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.5e-72 276.6 177 75.7
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 3.4e-72 275.4 175 75.4
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 1.3e-71 273.5 193 70.5
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.3e-71 273.5 168 73.8
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 1.7e-71 273.1 173 75.7
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 1.7e-71 273.1 173 75.7
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 3.7e-71 271.9 202 65.3
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 3.7e-71 271.9 164 76.2
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 8.3e-71 270.8 145 81.4
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 1.1e-70 270.4 189 69.8
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 5.4e-70 268.1 189 69.8
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 7.0e-70 267.7 165 80.0
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.2e-69 266.9 142 84.5
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.3e-68 263.5 156 75.0
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 8.6e-68 260.8 141 80.1
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.1e-67 260.4 153 76.5
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.9e-67 259.6 190 66.3
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 1.2e-66 256.9 142 78.9
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 4.7e-66 255.0 164 78.0
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 8.0e-66 254.2 142 76.8
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 2.0e-64 249.6 181 66.9
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.3e-63 246.9 140 77.1
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.7e-63 246.5 140 74.3
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.4e-62 242.7 140 75.0
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 5.4e-62 241.5 124 90.3
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 5.4e-62 241.5 147 78.9
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.2e-61 240.4 126 86.5
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.2e-61 240.4 150 76.7
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 2.0e-61 239.6 184 65.8
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.3e-60 236.9 119 89.1
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 2.3e-60 236.1 156 72.4
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.1e-59 233.8 169 72.2
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.2e-58 230.3 127 80.3
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 2.8e-58 229.2 138 76.8
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 2.3e-57 226.1 153 71.9
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 5.2e-57 224.9 166 66.9
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 7.5e-56 221.1 140 76.4
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 5.4e-54 214.9 120 80.8
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.6e-53 213.4 140 66.4
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 8.6e-52 207.6 162 64.2
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 7.3e-51 204.5 151 64.9
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 2.8e-50 202.6 118 81.4
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 3.7e-47 192.2 188 54.3
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.6e-45 186.8 98 83.7
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 4.0e-41 172.2 102 82.4
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 6.8e-41 171.4 150 62.0
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.2e-40 170.6 87 87.4
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.4e-40 169.1 140 54.3
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.7e-39 166.8 139 54.0
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 2.9e-39 166.0 120 66.7
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 8.4e-39 164.5 154 51.3
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.3e-36 157.1 202 43.6
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 8.6e-36 154.5 178 43.8
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.2e-34 150.6 176 46.6
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.6e-34 150.2 155 45.2
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 1.3e-31 140.6 152 51.3
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 2.7e-29 132.9 85 69.4
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.9e-28 129.0 72 83.3
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 7.3e-27 124.8 148 43.9
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 2.8e-26 122.9 59 88.1
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.6e-26 122.5 70 81.4
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 8.4e-23 111.3 118 47.5
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 1.1e-22 110.9 194 39.7
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 2.4e-22 109.8 53 90.6
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 6.4e-15 85.1 82 54.9
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 1.9e-14 83.6 124 48.4
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.3e-12 77.4 165 28.5
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 2.8e-10 69.7 142 33.1
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 2.4e-09 66.6 31 87.1
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 2.0e-08 63.5 89 42.7
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 2.5e-06 56.6 48 50.0
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 2.5e-06 56.6 154 27.3


User provided reference genes

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