Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G122200 Manihot esculenta HOM05D006484 ORTHO05D008002 8.2e-160 567.0 287 100.0
Thecc.04G008700 Theobroma cacao HOM05D006484 ORTHO05D008002 1.5e-113 413.3 281 75.1
COL.COLO4_28946 Corchorus olitorius HOM05D006484 ORTHO05D008002 2.0e-113 412.9 275 74.9
Potri.017G073000 Populus trichocarpa HOM05D006484 ORTHO05D008002 3.4e-113 412.1 275 75.3
Duzib147G0204 Durio zibethinus HOM05D006484 ORTHO05D008002 7.1e-111 404.4 277 72.9
TWI56G0797 Tripterygium wilfordii HOM05D006484 ORTHO05D008002 7.8e-110 401.0 286 71.7
CSS0043741 Camellia sinensis var. sinensis HOM05D006484 ORTHO05D008002 1.3e-109 400.2 294 72.4
Gohir.A11G067300 Gossypium hirsutum HOM05D006484 ORTHO05D008002 8.6e-109 397.5 281 72.6
Prupe.3G283800 Prunus persica HOM05D006484 ORTHO05D008002 1.1e-108 397.1 299 70.2
Cfa007430 Carpinus fangiana HOM05D006484 ORTHO05D008002 2.8e-107 392.5 270 71.9
Haze_14667 Corylus avellana HOM05D006484 ORTHO05D008002 2.8e-107 392.5 295 69.2
Gohir.D11G071200 Gossypium hirsutum HOM05D006484 ORTHO05D008002 3.6e-107 392.1 278 72.7
Gorai.007G076500 Gossypium raimondii HOM05D006484 ORTHO05D008002 3.6e-107 392.1 278 72.7
Dinv33496 Davidia involucrata HOM05D006484 ORTHO05D008002 1.8e-106 389.8 273 74.4
CiPaw.03G037700 Carya illinoinensis HOM05D006484 ORTHO05D008002 2.4e-106 389.4 297 69.7
Rhsim08G0055200 Rhododendron simsii HOM05D006484 ORTHO05D008002 6.8e-106 387.9 288 71.2
QL02p076682 Quercus lobata HOM05D006484 ORTHO05D008002 8.9e-106 387.5 290 70.3
Ciclev10016148m.g Citrus clementina HOM05D006484 ORTHO05D008002 1.2e-105 387.1 291 69.4
Sabra16G0230700 Salix brachista HOM05D006484 ORTHO05D008002 1.5e-105 386.7 281 70.5
TAR629G1796 Trochodendron aralioides HOM05D006484 ORTHO05D008002 4.4e-105 385.2 279 72.0
Hma1.2p1_0802F.1_g220370 Hydrangea macrophylla HOM05D006484 ORTHO05D008002 6.4e-104 381.3 251 76.5
MD17G1035000 Malus domestica HOM05D006484 ORTHO05D008002 1.9e-103 379.8 298 66.4
RcHm_v2.0_Chr2g0171411 Rosa chinensis HOM05D006484 ORTHO05D008002 2.4e-103 379.4 269 70.3
FAN02G1518 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.3e-101 373.6 271 69.7
FvH4_6g50620 Fragaria vesca HOM05D006484 ORTHO05D008002 1.7e-101 373.2 271 70.1
FAN14G3872 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.7e-101 373.2 271 69.7
PGR142G1659 Punica granatum HOM05D006484 ORTHO05D008002 1.7e-101 373.2 269 72.1
GSVIVG01032484001 Vitis vinifera HOM05D006484 ORTHO05D008002 1.5e-100 370.2 231 78.8
SalBow7G4444 Salvia bowleyana HOM05D006484 ORTHO05D008002 3.3e-100 369.0 270 69.6
Sed0007993 Sechium edule HOM05D006484 ORTHO05D008002 5.6e-100 368.2 287 67.2
arahy.Tifrunner.gnm1.ann1.J6NIZK Arachis hypogaea HOM05D006484 ORTHO05D008002 8.1e-99 364.4 263 71.9
arahy.Tifrunner.gnm1.ann1.ND36BV Arachis hypogaea HOM05D006484 ORTHO05D008002 8.1e-99 364.4 263 71.9
MELO3C009955.2 Cucumis melo HOM05D006484 ORTHO05D008002 1.4e-98 363.6 276 68.8
CsaV3_3G042410 Cucumis sativus L. HOM05D006484 ORTHO05D008002 1.8e-98 363.2 276 68.5
ClCG10G014230 Citrullus lanatus HOM05D006484 ORTHO05D008002 3.1e-98 362.5 274 69.3
Migut.K01368 Erythranthe guttata HOM05D006484 ORTHO05D008002 3.1e-98 362.5 257 70.0
Cc07_g02300 Coffea canephora HOM05D006484 ORTHO05D008002 4.0e-98 362.1 230 77.0
FAN09G0334 Fragaria x ananassa HOM05D006484 ORTHO05D008002 4.0e-98 362.1 279 67.0
SGA_v2.0_scaffold30G12470 Striga asiatica HOM05D006484 ORTHO05D008002 6.9e-98 361.3 255 72.2
Eucgr.I01814 Eucalyptus grandis HOM05D006484 ORTHO05D008002 9.0e-98 360.9 290 66.6
Nitab4.5_0003337g0080 Nicotiana tabacum HOM05D006484 ORTHO05D008002 1.2e-97 360.5 291 66.7
Nitab4.5_0005176g0030 Nicotiana tabacum HOM05D006484 ORTHO05D008002 1.2e-97 360.5 290 66.9
THA.LOC104805398 Tarenaya hassleriana HOM05D006484 ORTHO05D008002 1.2e-97 360.5 282 69.1
MSTRG.15510 Avicennia marina HOM05D006484 ORTHO05D008002 1.5e-97 360.1 274 67.5
MBI16_g26453_MAGBIO Magnolia biondii HOM05D006484 ORTHO05D008002 3.4e-97 359.0 246 73.2
Aqoxy3G01007 Aquilegia oxysepala HOM05D006484 ORTHO05D008002 5.8e-97 358.2 266 68.0
Lj7A591T78 Lonicera japonica HOM05D006484 ORTHO05D008002 5.8e-97 358.2 242 74.0
Peaxi162Scf00129g00106 Petunia axillaris HOM05D006484 ORTHO05D008002 7.6e-97 357.8 287 65.9
HanXRQChr15g0474541 Helianthus annuus HOM05D006484 ORTHO05D008002 9.9e-97 357.5 287 64.5
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 9.9e-97 357.5 238 72.3
FAN05G1767 Fragaria x ananassa HOM05D006484 ORTHO05D008002 2.9e-96 355.9 318 60.4
ECA246G1918 Erigeron canadensis HOM05D006484 ORTHO05D008002 3.8e-96 355.5 235 74.9
CANSAT64G2071 Cannabis sativa HOM05D006484 ORTHO05D008002 8.4e-96 354.4 258 71.7
Solyc02g086890.3 Solanum lycopersicum HOM05D006484 ORTHO05D008002 1.1e-95 354.0 290 66.2
Sopen02g031660 Solanum pennellii HOM05D006484 ORTHO05D008002 2.4e-95 352.8 290 66.2
BcaC02g09737 Brassica carinata HOM05D006484 ORTHO05D008002 6.0e-94 348.2 269 65.1
C04p37040 Brassica napus HOM05D006484 ORTHO05D008002 6.0e-94 348.2 269 65.1
BolC4t25282H Brassica oleracea HOM05D006484 ORTHO05D008002 6.0e-94 348.2 269 65.1
Glyma.19G009200 Glycine max HOM05D006484 ORTHO05D008002 6.0e-94 348.2 262 67.2
Sp5g07210 Schrenkiella parvula HOM05D006484 ORTHO05D008002 6.0e-94 348.2 272 66.5
PSO063G6163 Papaver somniferum HOM05D006484 ORTHO05D008002 7.8e-94 347.8 295 62.4
Glyma.13G169000 Glycine max HOM05D006484 ORTHO05D008002 1.0e-93 347.4 260 67.3
A04p04700 Brassica napus HOM05D006484 ORTHO05D008002 1.7e-93 346.7 270 65.9
BraA04t16182Z Brassica rapa HOM05D006484 ORTHO05D008002 1.7e-93 346.7 270 65.9
Lalb_Chr21g0319431 Lupinus albus HOM05D006484 ORTHO05D008002 1.7e-93 346.7 237 73.4
VMungo0464G2075 Vigna mungo HOM05D006484 ORTHO05D008002 2.3e-93 346.3 277 65.3
PSO832G1464 Papaver somniferum HOM05D006484 ORTHO05D008002 3.9e-93 345.5 274 65.3
Hund05806 Selenicereus undatus HOM05D006484 ORTHO05D008002 6.6e-93 344.7 290 64.5
A09p48180 Brassica napus HOM05D006484 ORTHO05D008002 8.7e-93 344.4 272 65.8
BraA09t40274Z Brassica rapa HOM05D006484 ORTHO05D008002 8.7e-93 344.4 272 66.2
Lsat_1_v5_gn_0_26201 Lactuca sativa HOM05D006484 ORTHO05D008002 8.7e-93 344.4 292 63.0
AL5G36370 Arabidopsis lyrata HOM05D006484 ORTHO05D008002 1.5e-92 343.6 267 67.0
C08p30440 Brassica napus HOM05D006484 ORTHO05D008002 1.9e-92 343.2 271 65.7
BcaC07g39842 Brassica carinata HOM05D006484 ORTHO05D008002 2.5e-92 342.8 271 65.7
AT3G55250 Arabidopsis thaliana HOM05D006484 ORTHO05D008002 4.3e-92 342.0 267 66.3
BcaB02g08436 Brassica carinata HOM05D006484 ORTHO05D008002 4.3e-92 342.0 273 64.8
BolC8t50667H Brassica oleracea HOM05D006484 ORTHO05D008002 9.6e-92 340.9 271 65.3
PGSC0003DMG401000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 2.8e-91 339.3 227 73.6
PGSC0003DMG402000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 2.8e-91 339.3 227 73.6
CARHR165250 Cardamine hirsuta HOM05D006484 ORTHO05D008002 3.6e-91 339.0 267 66.3
Aa31LG10G9850 Aethionema arabicum HOM05D006484 ORTHO05D008002 4.8e-91 338.6 283 62.9
Carub.0005s2191 Capsella rubella HOM05D006484 ORTHO05D008002 1.4e-90 337.0 270 65.2
DCAR_021681 Daucus carota HOM05D006484 ORTHO05D008002 1.4e-90 337.0 316 58.5
Phvul.004G016700 Phaseolus vulgaris HOM05D006484 ORTHO05D008002 1.4e-90 337.0 289 63.0
Lj2g0018435 Lotus japonicus HOM05D006484 ORTHO05D008002 1.5e-89 333.6 292 60.3
Thhalv10010599m.g Eutrema salsugineum HOM05D006484 ORTHO05D008002 2.6e-89 332.8 289 60.6
TPR.G2295 Trifolium pratense HOM05D006484 ORTHO05D008002 3.4e-89 332.4 271 62.7
Ca_04198_v3 Cicer arietinum L. HOM05D006484 ORTHO05D008002 7.6e-89 331.3 251 67.3
EL10Ac6g14629 Beta vulgaris HOM05D006484 ORTHO05D008002 3.8e-88 328.9 276 63.0
Ah.02g127510 Amaranthus hybridus HOM05D006484 ORTHO05D008002 7.1e-87 324.7 217 73.7
CDE05G1394 Ceratophyllum demersum HOM05D001719 ORTHO05D008883 2.7e-86 322.8 224 70.5
Sc10g0003790 Simmondsia chinensis HOM05D006484 ORTHO05D008002 2.3e-85 319.7 262 63.7
Medtr6g007180 Medicago truncatula HOM05D006484 ORTHO05D008002 9.6e-84 314.3 275 60.0
Psat1g058640 Pisum sativum HOM05D006484 ORTHO05D008002 1.3e-83 313.9 230 67.8
Os05g0526200 Oryza sativa ssp. japonica HOM05D006484 ORTHO05D008002 6.2e-83 311.6 248 66.1
Nn4g22800 Nelumbo nucifera HOM05D006484 ORTHO05D008002 3.1e-82 309.3 276 61.6
ATR0730G086 Amborella trichopoda HOM05D006484 ORTHO05D008002 1.2e-81 307.4 230 66.1
Actinidia35740 Actinidia chinensis HOM05D006484 ORTHO05D008002 2.8e-75 286.2 222 66.2
BcaB01g00117 Brassica carinata HOM05D006484 ORTHO05D008002 7.6e-73 278.1 288 54.2
HPP92_024318 Vanilla planifolia HOM05D006484 ORTHO05D008002 7.1e-71 271.6 242 59.9
Cpa.g.sc39.92 Carica papaya HOM05D006484 ORTHO05D008002 2.4e-66 256.5 171 76.0
vmacro18241 Vaccinium macrocarpon HOM05D006484 ORTHO05D008002 4.5e-65 252.3 293 51.5
AUR62007841 Chenopodium quinoa HOM05D006484 ORTHO05D008002 7.2e-63 245.0 261 54.0
Zm00001eb215070 Zea mays HOM05D006484 ORTHO05D008002 1.1e-50 204.5 150 67.3
BolC3t16636H Brassica oleracea HOM05D006484 ORTHO05D008002 1.2e-49 201.1 169 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2636 Anthoceros agrestis HOM05D006484 ORTHO05D008002 3.5e-49 199.5 208 51.0
Pp3c21_1380 Physcomitrium patens HOM05D006484 ORTHO05D008002 7.2e-47 191.8 194 49.5
AUR62003035 Chenopodium quinoa HOM05D006484 ORTHO05D008002 4.7e-46 189.1 203 52.7
Mapoly0095s0016 Marchantia polymorpha HOM05D006484 ORTHO05D008002 6.1e-46 188.7 192 49.0
BolC7t43763H Brassica oleracea HOM05D006484 ORTHO05D008002 1.4e-45 187.6 189 54.5
SMO165G0092 Selaginella moellendorffii HOM05D006484 ORTHO05D008002 1.5e-44 184.1 201 47.8
HPP92_024280 Vanilla planifolia HOM05D006484 ORTHO05D008002 4.5e-41 172.6 161 57.1
CBR_g163 Chara braunii HOM05D006484 ORTHO05D008002 3.0e-37 159.8 195 41.5
CAN.G473.120 Capsicum annuum HOM05D006484 ORTHO05D008002 6.8e-37 158.7 140 60.7
Atru.chr6.2293 Acer truncatum HOM05D006484 ORTHO05D008002 8.3e-35 151.8 86 80.2
CAN.G685.18 Capsicum annuum HOM05D006484 ORTHO05D008002 2.3e-29 133.7 91 71.4
Atru.chr6.2294 Acer truncatum HOM05D006484 ORTHO05D008002 1.2e-28 131.3 87 78.2
MD09G1034600 Malus domestica HOM05D006484 ORTHO05D000001 9.1e-26 121.7 91 67.0
BcaC06g34142 Brassica carinata HOM05D006484 ORTHO05D008002 1.4e-21 107.8 131 48.1
arahy.Tifrunner.gnm1.ann1.QWBN9A Arachis hypogaea HOM05D006484 ORTHO05D008002 2.4e-18 97.1 60 76.7
Cre03.g183400 Chlamydomonas reinhardtii HOM05D006484 ORTHO05D008002 2.9e-16 90.1 223 28.7
TPR.G33278 Trifolium pratense HOM05D006484 ORTHO05D008002 1.8e-13 80.9 48 79.2
MD09G1034700 Malus domestica HOM05D006484 ORTHO05D008002 4.0e-13 79.7 86 54.7
arahy.Tifrunner.gnm1.ann1.5V94PQ Arachis hypogaea HOM05D005791 ORTHO05D008002 3.0e-08 63.5 34 88.2
PRCOL_00006041 Prasinoderma coloniale HOM05D006484 ORTHO05D008002 9.5e-07 58.5 129 31.8
MCO09G217 Micromonas commoda HOM05D006484 ORTHO05D008002 8.0e-06 55.5 175 25.7


User provided reference genes

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