Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 3.2e-87 325.1 169 100.0
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 1.1e-60 236.9 153 87.6
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 3.5e-33 145.6 153 56.2
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.0e-29 134.0 156 51.9
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 5.2e-29 131.7 147 57.1
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 7.5e-28 127.9 142 52.1
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 1.7e-24 116.7 137 48.9
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 2.3e-24 116.3 148 50.0
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 3.9e-24 115.5 137 52.6
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 5.0e-24 115.2 154 48.1
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 6.6e-24 114.8 154 46.8
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 1.5e-23 113.6 127 54.3
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 2.5e-23 112.8 127 51.2
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.1e-22 109.8 124 50.8
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 2.1e-22 109.8 135 48.1
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 6.2e-22 108.2 124 50.8
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 4.0e-21 105.5 151 41.7
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 4.4e-20 102.1 144 47.2
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 8.3e-19 97.8 119 50.4
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 1.1e-18 97.4 118 47.5
Sabra17G0063300 Salix brachista HOM05D007214 ORTHO05D008907 1.4e-18 97.1 85 61.2
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 1.2e-17 94.0 119 48.7
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 1.2e-17 94.0 152 44.7
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 2.7e-17 92.8 150 42.0
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 2.3e-16 89.7 132 47.0
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 3.9e-16 89.0 156 41.7
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 3.9e-16 89.0 152 43.4
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 5.1e-16 88.6 108 49.1
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 1.5e-15 87.0 153 40.5
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 1.2e-14 84.0 118 43.2
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 3.6e-14 82.4 132 38.6
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 6.2e-14 81.6 166 35.5
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 1.4e-13 80.5 153 37.3
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 2.3e-13 79.7 152 36.8
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 3.1e-13 79.3 114 44.7
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 4.0e-13 79.0 160 36.2
FAN05G0748 Fragaria x ananassa HOM05D007214 ORTHO05D008907 5.2e-13 78.6 108 45.4
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 8.9e-13 77.8 108 43.5
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 1.5e-12 77.0 130 37.7
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 2.6e-12 76.3 154 38.3
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 3.4e-12 75.9 156 37.2
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 5.8e-12 75.1 150 37.3
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 9.9e-12 74.3 154 38.3
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.3e-11 73.9 92 48.9
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 1.7e-11 73.6 150 38.0
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 1.7e-11 73.6 118 40.7
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 1.7e-11 73.6 130 38.5
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 2.2e-11 73.2 120 40.8
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 2.2e-11 73.2 131 35.9
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 3.7e-11 72.4 148 37.2
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 6.4e-11 71.6 190 34.7
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 8.3e-11 71.2 120 40.0
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 1.9e-10 70.1 152 40.1
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 1.9e-10 70.1 126 37.3
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 1.9e-10 70.1 124 37.9
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 4.1e-10 68.9 107 42.1
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 9.2e-10 67.8 118 41.5
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 1.6e-09 67.0 151 35.8
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 1.6e-09 67.0 118 39.8
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 2.1e-09 66.6 122 40.2
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 2.1e-09 66.6 112 38.4
TPR.G39060 Trifolium pratense HOM05D007214 ORTHO05D008907 2.7e-09 66.2 146 36.3
BraA06t26977Z Brassica rapa HOM05D007214 ORTHO05D008907 4.6e-09 65.5 119 40.3
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 4.6e-09 65.5 69 56.5
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 6.0e-09 65.1 170 33.5
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 7.8e-09 64.7 121 38.0
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 7.8e-09 64.7 121 38.0
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 1.3e-08 63.9 116 39.7
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 1.3e-08 63.9 117 35.9
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 1.3e-08 63.9 138 32.6
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 2.3e-08 63.2 53 64.2
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 4.3e-07 58.9 121 36.4
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 5.6e-07 58.5 120 35.0
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 7.3e-07 58.2 126 34.9
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 9.5e-07 57.8 133 35.3
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 9.5e-07 57.8 79 46.8
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 1.2e-06 57.4 125 34.4
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 2.8e-06 56.2 115 33.0


User provided reference genes

Program Settings