Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 0.0e+00 1427.5 737 100.0
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 0.0e+00 1184.5 738 84.3
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 0.0e+00 1119.4 750 78.9
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 0.0e+00 1111.7 737 80.7
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 0.0e+00 1110.5 737 81.0
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 0.0e+00 1109.4 749 78.4
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 0.0e+00 1107.0 750 78.5
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 0.0e+00 1105.5 749 78.1
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 0.0e+00 1100.9 744 78.4
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 0.0e+00 1099.0 725 79.3
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 0.0e+00 1099.0 750 77.2
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 0.0e+00 1089.3 749 76.8
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 0.0e+00 1087.0 749 76.8
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 0.0e+00 1087.0 749 77.3
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 0.0e+00 1085.5 749 76.9
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 0.0e+00 1080.1 749 76.8
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 0.0e+00 1077.0 754 75.5
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 1.0e-311 1073.2 739 78.2
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 4.5e-311 1070.8 744 76.6
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 6.0e-311 1070.5 750 77.5
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 1.0e-310 1069.7 749 76.8
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.3e-310 1069.3 756 75.0
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.7e-310 1068.9 756 75.0
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 2.9e-310 1068.1 760 75.9
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 5.5e-309 1063.9 745 75.7
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 2.7e-308 1061.6 719 78.3
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 3.9e-307 1057.7 749 76.6
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.1e-306 1056.2 756 74.1
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.3e-306 1054.7 744 75.4
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 1.3e-305 1052.7 750 74.9
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.3e-302 1042.7 745 74.8
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.5e-302 1040.4 738 74.9
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.1e-301 1039.6 746 74.9
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.5e-301 1037.3 738 74.9
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.1e-300 1035.4 749 73.3
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.1e-300 1033.9 744 73.9
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 8.0e-300 1033.5 748 75.3
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 1.4e-299 1032.7 749 74.0
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.3e-299 1031.9 744 74.1
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 1.5e-298 1029.2 730 75.6
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.6e-298 1028.5 751 72.6
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.4e-296 1022.7 741 75.0
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 4.1e-296 1021.1 740 74.3
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 4.5e-295 1017.7 751 72.4
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 4.5e-295 1017.7 733 76.0
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 4.5e-295 1017.7 722 76.6
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 1.7e-294 1015.8 749 72.4
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 2.9e-294 1015.0 748 72.3
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 8.5e-294 1013.4 752 72.5
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.5e-293 1012.7 741 73.7
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 1.9e-293 1012.3 749 72.2
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 2.5e-293 1011.9 748 72.3
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 2.5e-293 1011.9 738 73.7
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 9.4e-293 1010.0 741 73.4
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 9.4e-293 1010.0 739 73.5
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.6e-292 1009.2 739 74.8
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 2.1e-292 1008.8 735 72.8
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 2.7e-292 1008.4 749 72.4
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 1.8e-291 1005.7 750 72.3
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 9.8e-290 1000.0 749 73.7
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 2.2e-289 998.8 782 70.6
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 6.3e-289 997.3 745 72.9
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.1e-288 996.5 740 71.9
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.4e-288 996.1 767 72.2
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 3.1e-288 995.0 750 72.0
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 5.4e-288 994.2 741 71.7
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 7.0e-288 993.8 753 70.5
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 9.1e-288 993.4 744 73.0
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.0e-286 989.9 767 71.7
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 1.7e-286 989.2 748 71.4
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 3.8e-286 988.0 748 71.3
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 3.8e-286 988.0 748 71.1
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.8e-286 988.0 736 71.6
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 8.6e-286 986.9 755 71.3
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.9e-285 985.7 741 71.3
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.9e-285 985.7 749 72.9
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 1.2e-284 983.0 742 70.9
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 1.6e-284 982.6 748 71.3
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 2.8e-284 981.9 748 71.1
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 2.8e-284 981.9 748 71.0
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 4.7e-284 981.1 750 70.9
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 8.0e-284 980.3 737 71.0
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 8.0e-284 980.3 748 70.1
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 2.3e-283 978.8 748 70.5
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 2.3e-283 978.8 738 71.7
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.0e-283 978.0 794 69.5
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 8.9e-283 976.9 738 71.3
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 1.3e-281 973.0 748 70.5
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.3e-281 973.0 743 71.1
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 1.7e-281 972.6 748 70.5
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 1.4e-280 969.5 751 69.9
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 4.1e-280 968.0 738 71.0
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 5.4e-280 967.6 725 70.8
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 7.8e-279 963.8 725 70.8
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 5.0e-278 961.1 745 69.8
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 6.6e-278 960.7 744 70.0
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 9.5e-277 956.8 731 71.0
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 9.5e-277 956.8 739 70.5
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 9.5e-277 956.8 734 71.1
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 1.2e-276 956.4 742 70.9
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 3.4e-274 948.3 740 70.3
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 1.3e-273 946.4 738 69.8
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.4e-272 943.0 740 68.5
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 1.4e-272 943.0 737 69.2
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.4e-272 942.2 700 72.9
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 9.2e-272 940.3 730 69.6
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 6.0e-271 937.6 754 67.8
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 1.7e-270 936.0 729 69.5
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 3.3e-269 931.8 713 69.3
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 7.3e-269 930.6 749 67.8
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 2.6e-266 922.2 758 65.7
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 2.9e-265 918.7 759 67.5
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 3.7e-265 918.3 725 68.4
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 8.3e-265 917.1 730 67.5
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.9e-264 916.0 737 68.5
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 2.4e-264 915.6 725 68.4
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 2.4e-264 915.6 725 68.4
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.1e-263 912.5 725 67.9
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 3.9e-262 908.3 753 67.1
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.1e-261 906.7 782 64.3
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 2.0e-258 896.0 728 66.9
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 2.6e-258 895.6 723 68.7
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 9.9e-258 893.6 746 67.2
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 9.2e-256 887.1 745 66.2
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 2.8e-252 875.5 741 66.0
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 3.2e-248 862.1 746 66.0
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 4.6e-247 858.2 775 63.0
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 5.6e-245 851.3 713 65.6
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 1.3e-241 840.1 795 61.4
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.0e-238 830.5 544 80.1
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 4.9e-225 785.0 741 62.1
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 3.3e-221 772.3 751 56.6
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 6.0e-215 751.5 729 59.1
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 5.3e-211 738.4 726 61.0
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 2.9e-209 732.6 741 58.7
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.1e-203 714.1 440 82.5
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 4.1e-195 685.6 722 53.5
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 2.0e-189 666.8 765 53.3
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 8.5e-177 624.8 682 54.0
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.3e-172 610.9 567 61.2
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 5.5e-168 595.5 372 83.1
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.7e-140 504.2 732 45.6
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 3.0e-137 493.4 429 63.2
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 8.9e-134 481.9 303 82.2
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.4e-133 479.6 643 46.8
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 1.9e-128 464.2 440 60.7
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 7.3e-120 435.6 749 40.7
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 9.6e-120 435.3 765 41.2
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 9.6e-120 435.3 765 41.2
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 6.2e-119 432.6 503 49.9
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 8.4e-100 369.0 350 57.7
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 1.9e-96 357.8 282 69.5
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 7.7e-93 345.9 576 39.6
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 5.0e-92 343.2 281 68.0
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 1.1e-91 342.0 258 71.3
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 6.3e-87 326.2 358 53.9
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 4.7e-82 310.1 184 87.0
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 1.5e-64 251.9 405 39.3
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.8e-63 246.9 602 36.0
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 7.7e-61 239.6 453 40.2
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 3.4e-56 224.2 633 30.5
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 9.5e-51 206.1 626 34.3
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 9.2e-46 189.5 194 57.7
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 2.8e-42 177.9 110 78.2
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 6.6e-36 156.8 171 53.2
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 3.3e-35 154.5 131 64.1
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 5.6e-35 153.7 97 77.3
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 2.1e-34 151.8 97 76.3
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 5.8e-32 143.7 228 42.1
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-31 142.5 302 36.8
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 6.4e-31 140.2 81 84.0
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 1.1e-30 139.4 72 91.7
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 9.2e-30 136.3 76 92.1
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 1.7e-28 132.1 72 90.3
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 2.5e-19 101.7 51 92.2
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 3.3e-19 101.3 241 37.3
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 2.1e-18 98.6 71 67.6
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 4.7e-18 97.4 60 75.0
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 6.2e-18 97.1 217 35.0
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.4e-17 95.9 50 92.0
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 8.4e-15 86.7 60 66.7
Hma1.2p1_0006F.1_g004670 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.4e-14 85.9 244 31.1
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.6e-13 82.4 84 57.1
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 5.1e-12 77.4 85 51.8


User provided reference genes

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