Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 2257.6 1160 100.0
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 2041.2 1169 89.6
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 2032.7 1169 89.6
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 2003.4 1167 88.1
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 2000.7 1162 86.8
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1994.2 1172 86.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1993.4 1173 86.5
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1991.9 1172 86.9
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1987.6 1163 87.4
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1987.6 1161 86.3
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1981.8 1168 86.6
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1979.5 1167 86.5
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1978.8 1165 86.8
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1976.1 1160 85.3
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1976.1 1160 85.8
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1976.1 1164 87.0
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1974.1 1162 86.1
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1970.7 1164 86.2
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1970.7 1163 86.4
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1967.2 1173 85.3
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1967.2 1162 85.8
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1966.4 1176 85.9
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1966.4 1166 86.2
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1966.0 1164 86.3
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1966.0 1167 86.0
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1965.7 1168 85.8
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1961.0 1160 85.8
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1960.7 1166 86.0
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1960.3 1173 85.2
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1959.5 1167 86.1
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1958.7 1169 85.9
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1958.0 1160 84.9
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1953.7 1175 85.2
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1952.6 1175 85.2
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1950.3 1172 84.9
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1949.9 1165 84.9
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1947.9 1169 85.5
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1946.8 1164 85.3
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1943.3 1204 83.2
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1941.4 1165 85.1
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1936.4 1165 84.1
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1935.2 1168 84.3
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1934.5 1162 84.6
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1934.5 1170 84.5
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1932.5 1172 84.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1931.8 1195 83.3
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1931.4 1172 84.4
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1930.2 1177 83.7
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1929.1 1173 83.8
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1927.1 1172 84.3
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1917.1 1164 84.1
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1915.6 1170 83.2
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1914.4 1165 83.8
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1180 83.1
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1913.3 1165 83.8
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1911.3 1176 83.2
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1911.3 1165 83.7
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1909.8 1181 82.4
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1168 83.2
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1166 83.4
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1172 83.1
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1092 87.7
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1907.1 1180 82.7
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1904.8 1170 82.8
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1168 83.2
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1900.9 1173 82.9
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1172 82.9
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1172 82.9
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1191 81.9
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1212 80.7
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1897.5 1168 83.0
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1893.6 1184 81.8
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1893.2 1164 83.2
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1892.9 1175 82.4
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1889.8 1168 82.7
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1889.4 1164 84.1
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1884.0 1163 82.7
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1883.6 1162 82.4
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1875.9 1209 80.3
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1875.5 1160 81.6
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1874.8 1152 83.4
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1869.0 1169 81.4
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1864.7 1165 81.5
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1861.7 1100 85.2
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1857.4 1169 82.0
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1854.3 1100 84.1
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1832.8 1181 80.6
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1813.1 1168 78.5
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1804.3 1324 72.8
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1793.9 1194 78.9
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1793.9 1161 77.8
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1776.5 1173 77.7
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1740.3 1150 78.2
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1705.6 1159 75.1
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1676.0 1166 73.5
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1654.8 1165 71.7
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1642.9 1000 83.7
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1639.8 1166 71.7
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1618.2 1151 75.8
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1595.9 936 86.0
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1511.9 838 92.5
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1465.3 847 88.0
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1443.3 1160 63.4
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1431.0 1158 63.6
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1385.2 1156 62.0
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1383.6 1155 61.9
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1357.4 1172 59.6
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1330.5 799 84.1
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1274.6 797 81.1
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1222.2 787 78.4
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1127.5 695 82.7
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1096.6 915 61.1
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 3.1e-306 1055.4 1190 47.3
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 1.6e-291 1006.5 648 77.9
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 9.0e-290 1000.7 743 72.1
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 7.4e-284 981.1 576 87.0
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.8e-283 979.2 595 82.5
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.7e-278 962.6 545 90.3
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 8.7e-277 957.6 599 83.5
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.0e-256 891.0 520 83.5
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 1.3e-256 890.6 627 73.2
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 1.7e-219 767.3 465 81.3
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 5.6e-215 752.3 477 80.3
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.2e-206 724.5 399 89.0
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.6e-153 548.1 357 80.1
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 7.9e-153 545.8 354 79.4
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 6.6e-115 419.9 377 57.3
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 2.8e-113 414.5 279 76.7
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 3.8e-86 324.3 195 83.1
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.1e-64 253.1 168 81.5
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.7e-46 192.6 143 69.9
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 8.8e-43 180.3 117 82.1
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 1.3e-38 166.4 104 82.7
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 5.0e-38 164.5 110 79.1
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 8.8e-35 153.7 78 92.3
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 8.2e-33 147.1 96 80.2
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 4.1e-32 144.8 87 82.8
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.0e-19 101.7 131 44.3
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 5.2e-19 101.3 131 44.3
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 5.7e-18 97.8 96 62.5
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 2.4e-16 92.4 93 65.6
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.2e-14 85.9 51 78.4
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 2.5e-13 82.4 51 76.5
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.2e-13 82.0 51 76.5
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 1.4e-08 66.6 57 66.7
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.5e-07 61.6 37 73.0
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 7.7e-07 60.8 330 26.4


User provided reference genes

Program Settings