Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.1e-103 380.2 223 100.0
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 4.8e-99 364.8 223 96.9
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 2.1e-94 349.4 223 93.7
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 8.0e-94 347.4 223 91.9
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 8.0e-94 347.4 223 92.4
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.0e-93 347.1 223 91.9
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.0e-93 347.1 223 92.4
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.0e-93 347.1 223 92.4
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 1.8e-93 346.3 223 93.7
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.8e-93 346.3 223 92.4
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 3.0e-93 345.5 223 91.0
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.0e-93 345.1 223 91.5
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 4.0e-93 345.1 223 91.5
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 5.2e-93 344.7 223 93.3
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 5.2e-93 344.7 223 92.4
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 1.1e-92 343.6 223 90.6
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.1e-92 343.6 223 91.9
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.5e-92 343.2 224 92.4
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.5e-92 343.2 224 92.4
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.5e-92 343.2 223 91.9
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 2.0e-92 342.8 223 91.9
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 2.6e-92 342.4 223 91.0
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 4.4e-92 341.7 236 88.6
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 4.4e-92 341.7 223 91.5
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.4e-92 341.7 224 92.0
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 5.7e-92 341.3 223 91.5
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 9.7e-92 340.5 223 91.0
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 9.7e-92 340.5 223 91.5
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.7e-91 339.7 223 90.1
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 2.8e-91 339.0 221 90.5
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 3.7e-91 338.6 222 91.4
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 4.8e-91 338.2 223 90.1
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 4.8e-91 338.2 223 90.6
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 4.8e-91 338.2 223 91.0
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 1.1e-90 337.0 222 90.1
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 1.4e-90 336.7 229 90.0
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.4e-90 336.7 225 89.8
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 2.4e-90 335.9 225 89.8
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 2.4e-90 335.9 223 90.6
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 2.4e-90 335.9 223 90.1
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 3.1e-90 335.5 229 88.2
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 7.0e-90 334.3 226 88.9
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 7.0e-90 334.3 229 88.2
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 9.1e-90 334.0 225 89.3
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.2e-89 333.6 227 88.1
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.2e-89 333.6 223 89.2
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 2.0e-89 332.8 227 88.5
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 2.0e-89 332.8 229 87.3
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 3.5e-89 332.0 223 88.8
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 5.9e-89 331.3 223 88.3
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 5.9e-89 331.3 223 88.8
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.9e-89 331.3 225 88.9
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 5.9e-89 331.3 223 87.4
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 7.7e-89 330.9 229 88.2
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 7.7e-89 330.9 229 88.2
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 7.7e-89 330.9 223 88.8
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 7.7e-89 330.9 220 90.0
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.0e-88 330.5 229 87.3
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 1.7e-88 329.7 222 89.6
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.7e-88 329.7 223 88.3
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.7e-88 329.7 223 88.3
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.7e-88 329.7 223 87.4
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.7e-88 329.7 223 87.4
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 2.2e-88 329.3 223 87.9
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 2.2e-88 329.3 223 87.9
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 2.2e-88 329.3 223 87.9
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.2e-88 329.3 229 86.9
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 2.2e-88 329.3 223 89.7
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 2.2e-88 329.3 230 87.8
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 2.9e-88 328.9 228 87.3
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 2.9e-88 328.9 232 87.1
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 3.8e-88 328.6 229 86.5
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 87.4
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 87.4
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 87.4
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 88.3
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 87.4
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 3.8e-88 328.6 225 88.0
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 5.0e-88 328.2 229 86.5
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 6.5e-88 327.8 225 88.0
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 6.5e-88 327.8 230 87.4
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 8.5e-88 327.4 223 86.1
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 8.5e-88 327.4 230 85.7
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 87.4
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 87.4
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.1e-87 327.0 225 87.6
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 87.4
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 87.0
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 87.0
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 1.1e-87 327.0 228 85.5
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.1e-87 327.0 230 86.5
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.1e-87 327.0 230 87.4
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 1.1e-87 327.0 230 87.4
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.1e-87 327.0 230 87.4
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.5e-87 326.6 223 87.0
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.5e-87 326.6 229 87.3
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.5e-87 326.6 230 86.5
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 86.1
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 2.5e-87 325.9 233 85.8
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 5.5e-87 324.7 230 85.2
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.2e-86 323.6 223 86.5
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 1.2e-86 323.6 223 88.8
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.6e-86 323.2 222 86.9
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.1e-86 322.8 225 87.1
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 2.1e-86 322.8 224 86.2
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 2.7e-86 322.4 226 86.7
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 3.6e-86 322.0 227 85.9
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 1.4e-85 320.1 223 87.0
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.4e-85 320.1 229 85.6
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.3e-85 319.3 224 87.1
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.3e-85 319.3 224 87.1
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 2.3e-85 319.3 228 83.8
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.0e-85 318.9 223 87.0
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 6.8e-85 317.8 228 82.9
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.2e-83 312.8 201 90.5
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 1.4e-82 310.1 269 74.3
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 4.1e-82 308.5 205 89.3
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 4.1e-82 308.5 184 96.7
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 7.0e-82 307.8 208 88.9
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 2.0e-81 306.2 198 90.9
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.0e-80 303.9 229 81.7
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 1.0e-80 303.9 184 96.2
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.3e-80 303.5 208 88.5
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 1.7e-80 303.1 180 97.8
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.7e-80 303.1 188 93.6
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 2.2e-80 302.8 229 81.7
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 2.9e-80 302.4 229 82.5
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 3.8e-80 302.0 227 82.4
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 1.9e-79 299.7 179 97.2
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.1e-78 296.2 281 62.3
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 2.6e-76 289.3 201 87.6
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.4e-74 283.5 180 90.6
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 2.4e-74 282.7 168 97.6
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 5.9e-73 278.1 191 89.5
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 8.6e-72 274.2 223 75.8
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.0e-69 265.4 178 87.6
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 5.2e-69 265.0 184 85.3
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 6.8e-69 264.6 193 86.0
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.2e-68 263.8 197 83.8
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 2.2e-67 259.6 220 68.6
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 4.9e-67 258.5 169 88.8
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.8e-66 256.5 166 88.6
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 1.6e-65 253.4 209 77.0
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.6e-65 251.9 181 82.9
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 6.2e-62 241.5 148 97.3
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 3.1e-61 239.2 148 92.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.7e-59 233.4 225 69.3
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 7.0e-58 228.0 224 65.2
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 2.7e-57 226.1 178 78.1
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.5e-57 225.7 178 71.3
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.5e-57 225.7 137 97.8
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.3e-56 223.8 238 60.5
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.6e-54 216.9 156 73.7
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 3.6e-54 215.7 205 66.3
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.2e-51 206.5 132 96.2
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 2.9e-51 206.1 184 73.9
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 9.2e-50 201.1 162 75.9
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 6.0e-49 198.4 110 87.3
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.3e-48 197.2 137 74.5
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 5.2e-45 185.3 161 65.8
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 3.8e-35 152.5 122 68.0
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 1.6e-33 147.1 127 62.2
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.6e-28 129.8 201 44.8
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 3.4e-28 129.4 223 43.0
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.4e-18 97.4 109 49.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 2.4e-18 96.7 47 97.9
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 6.0e-17 92.0 78 64.1
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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