Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 5.2e-42 174.1 96 100.0
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.6e-27 125.9 96 72.9
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 2.8e-27 125.2 96 69.8
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 3.6e-27 124.8 94 68.1
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 6.2e-27 124.0 94 72.3
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 1.4e-26 122.9 94 68.1
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 1.2e-25 119.8 96 63.5
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 4.4e-25 117.9 89 69.7
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.1e-23 113.2 98 63.3
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.4e-23 112.8 96 61.5
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 1.4e-23 112.8 99 63.6
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 3.2e-23 111.7 97 61.9
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 4.1e-23 111.3 98 62.2
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 2.1e-22 109.0 89 66.3
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 2.7e-22 108.6 94 69.1
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 3.5e-22 108.2 96 61.5
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 3.5e-22 108.2 94 61.7
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 6.0e-22 107.5 96 61.5
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 7.8e-22 107.1 98 57.1
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 1.0e-21 106.7 89 65.2
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 1.0e-21 106.7 96 64.6
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 1.3e-21 106.3 98 62.2
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.7e-21 105.9 94 59.6
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 3.9e-21 104.8 96 60.4
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 6.6e-21 104.0 97 62.9
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.5e-20 102.8 96 62.5
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 1.9e-20 102.4 96 60.4
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 2.5e-20 102.1 94 61.7
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 3.3e-20 101.7 93 59.1
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 4.3e-20 101.3 97 56.7
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 9.5e-20 100.1 101 61.4
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 9.5e-20 100.1 90 63.3
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.2e-19 99.8 94 56.4
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.2e-19 99.8 100 62.0
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 1.6e-19 99.4 94 60.6
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.6e-19 99.4 89 65.2
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 2.8e-19 98.6 97 61.9
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 4.7e-19 97.8 97 57.7
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 4.7e-19 97.8 92 58.7
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 1.1e-18 96.7 96 58.3
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 1.1e-18 96.7 94 58.5
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 1.1e-18 96.7 94 58.5
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.8e-18 95.9 97 55.7
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.8e-18 95.9 92 57.6
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 3.1e-18 95.1 92 57.6
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 4.0e-18 94.7 81 64.2
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 4.0e-18 94.7 97 56.7
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.0e-18 94.7 94 56.4
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.0e-18 94.7 94 56.4
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 4.0e-18 94.7 94 56.4
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.2e-18 94.4 97 54.6
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 5.2e-18 94.4 97 57.7
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.2e-17 93.2 89 56.2
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.2e-17 93.2 89 56.2
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.2e-17 93.2 95 58.9
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 1.2e-17 93.2 97 56.7
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.2e-17 93.2 89 61.8
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 2.0e-17 92.4 92 57.6
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 2.0e-17 92.4 91 60.4
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 2.6e-17 92.0 99 58.6
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 3.4e-17 91.7 93 57.0
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 5.8e-17 90.9 95 57.9
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.2e-16 89.0 95 57.9
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 2.2e-16 89.0 92 55.4
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 2.9e-16 88.6 89 57.3
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 3.7e-16 88.2 98 54.1
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 3.7e-16 88.2 95 57.9
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 4.9e-16 87.8 87 58.6
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 4.9e-16 87.8 87 58.6
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 6.4e-16 87.4 95 54.7
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 6.4e-16 87.4 94 55.3
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 1.4e-15 86.3 102 56.9
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 2.4e-15 85.5 90 57.8
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.1e-15 84.7 92 56.5
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 4.1e-15 84.7 95 56.8
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 4.1e-15 84.7 90 56.7
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 9.2e-15 83.6 94 58.5
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 1.2e-14 83.2 95 52.6
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 1.6e-14 82.8 92 55.4
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 2.7e-14 82.0 84 56.0
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 7.8e-14 80.5 96 50.0
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 1.0e-13 80.1 94 52.1
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 1.3e-13 79.7 90 53.3
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 1.3e-13 79.7 93 54.8
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 1.7e-13 79.3 89 50.6
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.3e-13 79.0 90 56.7
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 2.3e-13 79.0 97 53.6
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 3.0e-13 78.6 85 54.1
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 3.9e-13 78.2 88 54.5
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 5.1e-13 77.8 93 50.5
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.5e-12 76.3 92 52.2
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 1.9e-12 75.9 90 55.6
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 7.3e-12 73.9 83 56.6
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 7.3e-12 73.9 82 59.8
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 1.2e-11 73.2 81 53.1
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.6e-11 72.8 92 52.2
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.1e-11 72.4 94 47.9
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 2.8e-11 72.0 88 53.4
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 3.6e-11 71.6 85 56.5
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 1.1e-10 70.1 90 55.6
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 1.1e-10 70.1 92 51.1
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 1.8e-10 69.3 51 70.6
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 1.8e-10 69.3 76 56.6
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 2.4e-10 68.9 46 80.4
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 6.8e-10 67.4 88 47.7
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 2.6e-09 65.5 83 49.4
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.4e-09 64.7 76 56.6
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 5.8e-09 64.3 87 50.6
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 5.8e-09 64.3 87 50.6
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 9.9e-09 63.5 44 70.5
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 3.2e-07 58.5 93 50.5
ATR0733G142 Amborella trichopoda HOM05D006766 ORTHO05D008534 4.2e-07 58.2 91 45.1
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 2.1e-06 55.8 94 42.6
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 3.5e-06 55.1 90 42.2


User provided reference genes

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