Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 2.2e-45 185.3 92 100.0
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 1.3e-21 106.3 85 61.2
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.4e-15 86.3 80 55.0
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.5e-14 82.8 86 47.7
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 1.5e-14 82.8 83 54.2
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 2.6e-14 82.0 76 59.2
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 5.7e-14 80.9 80 53.8
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.7e-13 79.3 75 53.3
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 3.7e-13 78.2 85 49.4
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 3.7e-13 78.2 79 50.6
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 6.3e-13 77.4 79 49.4
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 6.3e-13 77.4 86 43.0
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.1e-12 76.6 74 55.4
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.4e-12 76.3 81 53.1
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 3.1e-12 75.1 79 53.2
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 3.1e-12 75.1 86 43.0
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 3.1e-12 75.1 80 45.0
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 5.4e-12 74.3 92 43.5
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 5.4e-12 74.3 72 52.8
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 7.0e-12 73.9 80 47.5
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 9.2e-12 73.6 83 44.6
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 1.6e-11 72.8 79 46.8
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.6e-11 72.8 79 46.8
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.6e-11 72.8 80 51.2
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 1.6e-11 72.8 90 43.3
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 2.7e-11 72.0 81 46.9
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 2.7e-11 72.0 86 44.2
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 3.5e-11 71.6 80 48.8
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.5e-11 71.2 79 44.3
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.5e-11 71.2 80 50.0
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.5e-11 71.2 80 50.0
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 4.5e-11 71.2 80 45.0
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 5.9e-11 70.9 90 45.6
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 7.8e-11 70.5 83 43.4
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 7.8e-11 70.5 90 43.3
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 1.0e-10 70.1 84 41.7
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.0e-10 70.1 80 45.0
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.3e-10 69.7 79 43.0
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 1.3e-10 69.7 89 41.6
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.7e-10 69.3 80 45.0
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 1.7e-10 69.3 80 45.0
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.7e-10 69.3 79 48.1
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.9e-10 68.6 82 43.9
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 3.8e-10 68.2 76 48.7
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 3.8e-10 68.2 80 43.8
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 5.0e-10 67.8 90 42.2
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 6.6e-10 67.4 86 44.2
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.1e-09 66.6 80 41.2
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 1.5e-09 66.2 81 43.2
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 2.5e-09 65.5 80 42.5
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 3.3e-09 65.1 82 40.2
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 5.6e-09 64.3 83 39.8
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 5.6e-09 64.3 76 47.4
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 7.3e-09 63.9 86 40.7
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 7.3e-09 63.9 86 41.9
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 7.3e-09 63.9 79 40.5
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 9.5e-09 63.5 92 39.1
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 9.5e-09 63.5 78 41.0
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 9.5e-09 63.5 86 36.0
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 1.2e-08 63.2 86 37.2
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 1.6e-08 62.8 71 39.4
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 2.1e-08 62.4 80 40.0
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.8e-08 62.0 55 54.5
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 3.6e-08 61.6 86 36.0
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 3.6e-08 61.6 72 45.8
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 4.7e-08 61.2 86 40.7
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 8.0e-08 60.5 81 42.0
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 8.0e-08 60.5 77 39.0
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 8.0e-08 60.5 80 46.2
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 1.0e-07 60.1 69 43.5
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 1.0e-07 60.1 78 41.0
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.4e-07 59.7 77 41.6
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.4e-07 59.7 81 42.0
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 3.0e-07 58.5 79 40.5
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 4.0e-07 58.2 85 38.8
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 4.0e-07 58.2 84 36.9
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 4.0e-07 58.2 87 33.3
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 4.0e-07 58.2 77 42.9
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 4.0e-07 58.2 80 40.0
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 5.2e-07 57.8 81 40.7
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.2e-06 56.6 80 42.5
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 1.2e-06 56.6 84 34.5
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 1.5e-06 56.2 106 35.8
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 2.0e-06 55.8 74 39.2
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 2.0e-06 55.8 72 38.9
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 2.0e-06 55.8 80 33.8
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 4.4e-06 54.7 85 36.5
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 4.4e-06 54.7 85 36.5
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 5.7e-06 54.3 77 36.4
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 9.8e-06 53.5 75 37.3
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 9.8e-06 53.5 75 37.3
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 9.8e-06 53.5 75 37.3
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 9.8e-06 53.5 75 38.7


User provided reference genes

Program Settings