Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 2.3e-73 278.9 147 100.0
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 1.9e-64 249.2 147 86.4
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 4.8e-63 244.6 147 88.4
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 2.4e-62 242.3 147 89.1
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 2.4e-62 242.3 147 89.1
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 4.1e-62 241.5 147 85.0
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.3e-62 241.1 147 85.7
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 1.5e-61 239.6 147 85.0
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 2.6e-61 238.8 147 85.0
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 3.4e-61 238.4 147 84.4
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 3.4e-61 238.4 147 86.4
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 1.7e-60 236.1 147 86.4
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 2.2e-60 235.7 147 85.7
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 2.9e-60 235.3 147 85.7
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 6.5e-60 234.2 147 87.1
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 6.5e-60 234.2 147 86.4
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 8.5e-60 233.8 147 83.7
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.1e-59 233.4 147 84.4
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.1e-59 233.4 147 84.4
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.5e-59 232.3 147 83.7
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 3.2e-59 231.9 147 84.4
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.2e-59 231.5 147 82.3
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.2e-59 231.5 147 82.3
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 1.6e-58 229.6 145 83.4
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.6e-58 229.6 145 83.4
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 1.6e-58 229.6 145 83.4
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.6e-58 229.6 147 83.7
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.1e-58 229.2 145 83.4
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 2.1e-58 229.2 146 84.2
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 3.6e-58 228.4 147 82.3
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 3.6e-58 228.4 145 82.8
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 4.6e-58 228.0 145 82.8
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 6.1e-58 227.6 147 83.0
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 7.9e-58 227.3 147 82.3
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 1.0e-57 226.9 147 81.6
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.3e-57 225.7 147 84.4
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.3e-57 225.7 147 84.4
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.3e-57 225.7 147 84.4
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 8.8e-57 223.8 147 82.3
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 1.9e-56 222.6 147 80.3
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 2.5e-56 222.2 147 81.6
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 2.5e-56 222.2 147 81.0
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 3.3e-56 221.9 147 80.3
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 3.3e-56 221.9 147 80.3
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 4.3e-56 221.5 147 83.0
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 4.3e-56 221.5 147 82.3
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 4.3e-56 221.5 147 82.3
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 5.7e-56 221.1 147 83.0
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 7.4e-56 220.7 147 80.3
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 7.4e-56 220.7 147 80.3
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 9.7e-56 220.3 155 78.7
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 9.7e-56 220.3 147 79.6
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.3e-55 219.9 147 81.0
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 1.3e-55 219.9 144 80.6
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 1.7e-55 219.5 147 81.6
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.7e-55 219.5 147 79.6
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 2.2e-55 219.2 147 79.6
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 2.2e-55 219.2 147 80.3
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 2.2e-55 219.2 147 81.0
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 4.8e-55 218.0 147 79.6
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 4.8e-55 218.0 147 79.6
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 4.8e-55 218.0 148 79.7
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.3e-55 217.6 148 79.7
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.3e-55 217.6 148 79.7
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.1e-54 216.9 147 78.9
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.4e-54 216.5 147 80.3
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 2.4e-54 215.7 147 78.2
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 6.9e-54 214.2 147 77.6
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 9.1e-54 213.8 145 77.9
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 1.2e-53 213.4 148 81.1
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 2.6e-53 212.2 149 77.2
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 3.4e-53 211.8 147 78.9
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 5.9e-53 211.1 147 78.2
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 7.7e-53 210.7 147 78.9
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 7.7e-53 210.7 149 78.5
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 1.0e-52 210.3 147 76.9
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 2.2e-52 209.1 150 76.0
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 5.0e-52 208.0 147 73.5
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 1.9e-51 206.1 147 74.8
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 4.2e-51 204.9 147 75.5
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 4.2e-51 204.9 139 79.1
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 7.2e-51 204.1 138 80.4
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 9.4e-51 203.8 151 74.2
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.2e-50 203.4 150 73.3
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.2e-50 203.4 150 73.3
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 3.6e-50 201.8 150 74.7
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 4.7e-50 201.4 147 73.5
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 3.9e-49 198.4 149 71.8
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 5.1e-49 198.0 152 77.0
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.7e-47 193.0 152 70.4
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 1.7e-47 193.0 158 69.6
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.2e-47 192.6 147 72.1
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.2e-47 190.7 147 71.4
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 1.1e-46 190.3 153 71.2
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.4e-46 189.9 147 71.4
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 5.3e-46 188.0 151 69.5
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 5.3e-46 188.0 155 67.7
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 7.0e-46 187.6 154 68.8
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 1.2e-45 186.8 115 85.2
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.2e-45 186.8 155 67.1
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 3.4e-45 185.3 147 68.7
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 5.9e-45 184.5 154 68.2
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.0e-44 183.7 147 68.0
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 4.2e-43 178.3 152 65.8
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 8.0e-42 174.1 113 85.8
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.5e-40 169.9 139 67.6
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.5e-40 169.9 139 67.6
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.0e-40 169.5 149 63.8
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 7.4e-40 167.5 109 82.6
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 7.4e-40 167.5 162 60.5
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 7.4e-40 167.5 149 62.4
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 9.1e-38 160.6 100 83.0
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.2e-37 160.2 105 80.0
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 2.6e-37 159.1 147 62.6
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 7.7e-37 157.5 150 61.3
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 1.9e-35 152.9 147 61.2
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.6e-34 149.8 140 65.7
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 6.1e-34 147.9 135 63.7
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 8.0e-34 147.5 135 64.4
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 4.0e-33 145.2 153 55.6
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 1.7e-31 139.8 90 83.3
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 2.9e-28 129.0 93 73.1
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 2.9e-28 129.0 93 73.1
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 5.0e-28 128.3 84 78.6
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 5.5e-27 124.8 137 51.8
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 2.7e-26 122.5 128 53.9
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 2.8e-23 112.5 166 46.4
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 6.6e-20 101.3 78 67.9
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.6e-18 96.7 79 62.0
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 3.6e-18 95.5 79 58.2
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 4.7e-18 95.1 88 60.2
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 8.9e-17 90.9 72 72.2
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 1.2e-16 90.5 145 44.8
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 2.6e-16 89.4 151 40.4
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 2.6e-16 89.4 71 64.8
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.4e-16 89.0 66 68.2
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.4e-16 89.0 66 68.2
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 7.5e-16 87.8 69 60.9
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.3e-15 87.0 69 63.8
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.7e-15 86.7 69 63.8
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.2e-15 86.3 69 62.3
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 5.0e-12 75.1 72 55.6
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.5e-11 73.6 72 54.2
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 3.3e-11 72.4 125 44.0
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.0e-08 63.2 72 50.0
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 4.4e-08 62.0 70 47.1
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 3.2e-06 55.8 51 62.7


User provided reference genes

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