Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 9.2e-46 186.4 87 100.0
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 2.1e-42 175.3 87 90.8
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 3.2e-38 161.4 87 85.1
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 4.1e-38 161.0 87 82.8
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 5.4e-38 160.6 87 83.9
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 1.6e-37 159.1 87 81.6
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 2.0e-37 158.7 87 79.3
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 2.0e-37 158.7 87 83.9
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 2.7e-37 158.3 87 79.3
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 3.5e-37 157.9 87 80.5
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 3.5e-37 157.9 87 79.3
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 3.5e-37 157.9 87 80.5
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 3.5e-37 157.9 87 82.8
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 6.0e-37 157.1 87 80.5
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 7.8e-37 156.8 83 83.1
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 1.3e-36 156.0 87 79.3
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 1.3e-36 156.0 84 82.1
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 1.3e-36 156.0 87 80.5
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 2.3e-36 155.2 87 81.6
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 2.3e-36 155.2 87 81.6
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 2.3e-36 155.2 87 82.8
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 3.9e-36 154.5 87 83.9
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 3.9e-36 154.5 87 81.6
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 3.9e-36 154.5 87 80.5
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 5.0e-36 154.1 87 80.5
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 5.0e-36 154.1 87 83.9
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 6.6e-36 153.7 87 79.3
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 6.6e-36 153.7 83 80.7
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 8.6e-36 153.3 87 82.8
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 8.6e-36 153.3 87 75.9
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 1.1e-35 152.9 87 85.1
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 1.1e-35 152.9 87 80.5
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 1.9e-35 152.1 87 79.3
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 1.9e-35 152.1 87 79.3
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 2.5e-35 151.8 83 80.7
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 3.3e-35 151.4 87 80.5
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 4.3e-35 151.0 87 79.3
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 4.3e-35 151.0 87 79.3
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 5.6e-35 150.6 87 77.0
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 5.6e-35 150.6 87 79.3
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 5.6e-35 150.6 87 80.5
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 5.6e-35 150.6 87 79.3
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 7.3e-35 150.2 87 78.2
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 7.3e-35 150.2 87 78.2
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 7.3e-35 150.2 87 79.3
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 9.5e-35 149.8 87 78.2
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 9.5e-35 149.8 87 77.0
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.2e-34 149.4 87 78.2
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 1.2e-34 149.4 87 81.6
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 1.6e-34 149.1 87 80.5
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 2.1e-34 148.7 87 79.3
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 2.8e-34 148.3 87 78.2
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 3.6e-34 147.9 87 79.3
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 4.7e-34 147.5 83 80.7
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 4.7e-34 147.5 87 78.2
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 4.7e-34 147.5 87 78.2
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 6.2e-34 147.1 86 75.6
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 6.2e-34 147.1 87 77.0
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 6.2e-34 147.1 87 77.0
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 8.0e-34 146.7 87 77.0
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 8.0e-34 146.7 87 77.0
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 1.1e-33 146.4 87 78.2
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.1e-33 146.4 87 77.0
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 1.4e-33 146.0 87 78.2
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 1.4e-33 146.0 87 79.3
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 1.8e-33 145.6 87 77.0
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.8e-33 145.6 87 79.3
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.3e-33 145.2 87 79.3
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 3.1e-33 144.8 87 74.7
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 3.1e-33 144.8 87 74.7
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 3.1e-33 144.8 87 79.3
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 3.1e-33 144.8 87 79.3
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 4.0e-33 144.4 87 74.7
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 4.0e-33 144.4 87 74.7
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 4.0e-33 144.4 87 77.0
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 5.2e-33 144.1 87 78.2
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 5.2e-33 144.1 87 78.2
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 5.2e-33 144.1 87 78.2
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 6.8e-33 143.7 87 77.0
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 6.8e-33 143.7 84 77.4
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 8.9e-33 143.3 87 74.7
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 8.9e-33 143.3 85 76.5
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 1.2e-32 142.9 87 77.0
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.2e-32 142.9 87 75.9
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 1.5e-32 142.5 81 79.0
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 1.5e-32 142.5 86 76.7
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.5e-32 142.5 87 77.0
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.5e-32 142.5 86 76.7
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.5e-32 142.5 80 80.0
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 1.5e-32 142.5 87 77.0
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.0e-32 142.1 87 77.0
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 2.0e-32 142.1 87 74.7
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 2.0e-32 142.1 87 74.7
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 2.6e-32 141.7 87 75.9
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 2.6e-32 141.7 87 75.9
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 2.6e-32 141.7 88 73.9
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 3.4e-32 141.4 87 75.9
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.4e-32 141.4 86 74.4
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.4e-32 141.4 87 75.9
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 3.4e-32 141.4 87 78.2
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 3.4e-32 141.4 87 77.0
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 4.4e-32 141.0 87 78.2
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 5.8e-32 140.6 87 75.9
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 5.8e-32 140.6 87 75.9
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 7.5e-32 140.2 83 77.1
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 7.5e-32 140.2 86 75.6
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 9.8e-32 139.8 87 78.2
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 9.8e-32 139.8 86 74.4
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 9.8e-32 139.8 70 85.7
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 9.8e-32 139.8 70 85.7
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 1.7e-31 139.0 85 74.1
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 1.7e-31 139.0 88 72.7
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 2.2e-31 138.7 83 77.1
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 2.2e-31 138.7 78 78.2
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 2.2e-31 138.7 83 77.1
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 2.2e-31 138.7 83 77.1
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 2.9e-31 138.3 87 78.2
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 4.9e-31 137.5 84 77.4
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 6.4e-31 137.1 83 74.7
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 6.4e-31 137.1 86 72.1
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 9.2e-30 133.3 81 76.5
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 3.5e-29 131.3 87 74.7
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 6.0e-29 130.6 86 66.3
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 6.0e-29 130.6 87 70.1
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.5e-27 125.9 77 76.6
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 1.5e-27 125.9 72 77.8
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 1.5e-27 125.9 79 69.6
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 9.5e-27 123.2 87 67.8
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 9.5e-27 123.2 86 67.4
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 4.7e-26 120.9 83 66.3
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 4.7e-26 120.9 75 70.7
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 1.1e-25 119.8 86 69.8
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 1.5e-24 115.9 58 84.5
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 7.5e-24 113.6 54 88.9
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 8.3e-23 110.2 54 85.2
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.1e-22 109.8 51 90.2
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 2.4e-22 108.6 55 81.8
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 3.9e-20 101.3 65 75.4
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 4.3e-19 97.8 60 61.7
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 1.7e-15 85.9 59 61.0
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 2.9e-15 85.1 45 77.8


User provided reference genes

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