Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 7.8e-52 206.8 103 100.0
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 1.5e-50 202.6 103 97.1
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 4.1e-45 184.5 103 90.3
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 2.0e-44 182.2 104 89.4
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 3.5e-44 181.4 102 86.3
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 3.5e-44 181.4 103 88.3
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 4.6e-44 181.0 103 89.3
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 4.6e-44 181.0 103 88.3
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 4.6e-44 181.0 103 88.3
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 6.0e-44 180.6 103 88.3
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 6.0e-44 180.6 103 86.4
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 6.0e-44 180.6 103 88.3
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 7.8e-44 180.3 103 87.4
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 1.0e-43 179.9 103 85.4
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 1.0e-43 179.9 103 87.4
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 1.0e-43 179.9 103 85.4
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 1.3e-43 179.5 103 88.3
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.7e-43 179.1 103 87.4
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.3e-43 178.7 103 87.4
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 3.9e-43 177.9 103 84.5
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 3.9e-43 177.9 103 84.5
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 3.9e-43 177.9 103 84.5
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 3.9e-43 177.9 103 86.4
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 3.9e-43 177.9 104 84.6
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 5.0e-43 177.6 102 87.3
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 6.6e-43 177.2 102 85.3
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 8.6e-43 176.8 105 86.7
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 1.1e-42 176.4 103 87.4
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 1.5e-42 176.0 102 85.3
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 2.5e-42 175.3 103 83.5
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 2.5e-42 175.3 103 82.5
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 2.5e-42 175.3 103 83.5
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 2.5e-42 175.3 103 83.5
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 2.5e-42 175.3 103 83.5
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 2.5e-42 175.3 103 82.5
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 2.5e-42 175.3 103 83.5
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 2.5e-42 175.3 103 83.5
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 2.5e-42 175.3 103 83.5
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 4.3e-42 174.5 102 86.3
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 5.6e-42 174.1 103 83.5
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 82.5
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 1.6e-41 172.6 103 82.5
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 1.6e-41 172.6 103 82.5
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.1e-41 172.2 103 82.5
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.1e-41 172.2 103 82.5
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-41 171.8 104 82.7
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.8e-41 171.8 103 84.5
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 2.8e-41 171.8 103 85.4
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 3.6e-41 171.4 104 81.7
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 6.2e-41 170.6 103 80.6
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 8.0e-41 170.2 104 80.8
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 1.4e-40 169.5 103 80.6
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 1.4e-40 169.5 103 83.5
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 1.4e-40 169.5 103 78.6
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 1.8e-40 169.1 103 79.6
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 1.8e-40 169.1 103 81.6
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 6.8e-40 167.2 100 80.0
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 8.9e-40 166.8 104 83.7
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.2e-39 166.4 103 82.5
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.2e-39 166.4 103 82.5
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 2.0e-39 165.6 102 82.4
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 2.0e-39 165.6 102 82.4
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 2.0e-39 165.6 103 79.6
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 2.0e-39 165.6 103 77.7
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.6e-39 165.2 106 81.1
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 3.4e-39 164.9 103 78.6
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 3.4e-39 164.9 99 84.8
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 3.4e-39 164.9 103 80.6
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 3.4e-39 164.9 103 80.6
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 4.4e-39 164.5 106 80.2
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 5.8e-39 164.1 103 78.6
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 5.8e-39 164.1 103 82.5
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 5.8e-39 164.1 105 78.1
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 5.8e-39 164.1 103 76.7
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 5.8e-39 164.1 106 79.2
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 5.8e-39 164.1 103 80.6
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 5.8e-39 164.1 103 79.6
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 5.8e-39 164.1 103 79.6
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 7.5e-39 163.7 103 79.6
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 9.8e-39 163.3 103 81.6
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 1.3e-38 162.9 103 80.6
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 1.7e-38 162.5 103 80.6
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 2.2e-38 162.2 103 80.6
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 2.2e-38 162.2 107 78.5
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 2.9e-38 161.8 107 79.4
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 3.7e-38 161.4 103 80.6
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 4.9e-38 161.0 103 80.6
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 4.9e-38 161.0 103 79.6
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 6.4e-38 160.6 103 77.7
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 6.4e-38 160.6 104 77.9
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 6.4e-38 160.6 106 79.2
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 6.4e-38 160.6 103 78.6
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.9e-37 159.1 103 79.6
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 7.0e-37 157.1 104 76.9
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 1.2e-36 156.4 103 77.7
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 1.6e-36 156.0 93 82.8
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 1.6e-36 156.0 93 82.8
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 1.6e-36 156.0 101 77.2
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 2.1e-36 155.6 91 83.5
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 2.7e-36 155.2 106 75.5
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 2.7e-36 155.2 106 75.5
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 1.3e-35 152.9 103 76.7
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.7e-35 152.5 106 73.6
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.7e-35 152.5 106 73.6
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 2.3e-35 152.1 94 80.9
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 3.0e-35 151.8 106 76.4
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 5.1e-35 151.0 106 72.6
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 5.1e-35 151.0 103 73.8
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 1.9e-34 149.1 98 74.5
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 7.3e-34 147.1 98 76.5
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 2.1e-33 145.6 94 77.7
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 2.8e-33 145.2 82 82.9
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 4.7e-33 144.4 94 77.7
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 6.2e-33 144.1 97 76.3
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 1.1e-32 143.3 97 74.2
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 3.1e-32 141.7 103 69.9
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.6e-31 138.7 73 89.0
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 9.2e-29 130.2 85 72.9
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 9.2e-29 130.2 73 84.9
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 1.6e-28 129.4 98 64.3
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 1.0e-27 126.7 86 73.3
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 3.9e-27 124.8 69 84.1
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 1.3e-22 109.8 77 67.5
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.9e-21 105.9 73 65.8
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 5.4e-21 104.4 72 65.3
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 6.0e-20 100.9 64 68.8
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 1.0e-19 100.1 103 57.3
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 1.9e-18 95.9 68 70.6
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 1.9e-18 95.9 68 70.6
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 1.9e-18 95.9 56 78.6
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 8.1e-17 90.5 70 57.1
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 2.4e-16 89.0 89 58.4
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 5.3e-16 87.8 55 63.6
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 5.3e-16 87.8 65 58.5
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 3.8e-14 81.6 104 53.8
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 1.8e-08 62.8 67 47.8
Cre06.g278188 Chlamydomonas reinhardtii HOM05D005547 ORTHO05D006887 3.8e-06 55.1 63 46.0


User provided reference genes

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