Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 2.0e-36 155.2 75 100.0
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 8.5e-24 113.2 73 78.1
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.2e-17 92.8 77 61.0
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 4.5e-17 90.9 54 77.8
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 7.7e-17 90.1 77 57.1
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 7.7e-17 90.1 54 77.8
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 7.7e-17 90.1 54 77.8
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 1.3e-16 89.4 61 72.1
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.3e-16 89.4 80 57.5
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.3e-16 89.4 80 57.5
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.3e-16 89.4 80 57.5
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 1.7e-16 89.0 60 75.0
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 1.5e-15 85.9 75 54.7
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 2.5e-15 85.1 70 64.3
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 3.6e-14 81.3 71 62.0
Sp1g23170 Schrenkiella parvula HOM05D007313 ORTHO05D005299 4.7e-14 80.9 70 64.3
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 8.0e-14 80.1 74 60.8
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 1.0e-13 79.7 62 66.1
A08p26710 Brassica napus HOM05D007313 ORTHO05D005299 8.8e-13 76.6 74 58.1
BraA08t34617Z Brassica rapa HOM05D007313 ORTHO05D005299 8.8e-13 76.6 74 58.1
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 8.8e-13 76.6 72 55.6
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 1.2e-12 76.3 67 58.2
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 1.5e-12 75.9 68 61.8
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 1.5e-12 75.9 68 64.7
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 1.5e-12 75.9 68 64.7
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 1.5e-12 75.9 68 64.7
Carub.0001s2549 Capsella rubella HOM05D007313 ORTHO05D005299 2.0e-12 75.5 71 62.0
Sabra10G0078300 Salix brachista HOM05D007313 ORTHO05D005299 2.0e-12 75.5 67 62.7
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 3.4e-12 74.7 68 64.7
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 3.4e-12 74.7 68 64.7
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 4.4e-12 74.3 55 70.9
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 4.4e-12 74.3 55 70.9
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 4.4e-12 74.3 55 70.9
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 4.4e-12 74.3 70 61.4
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 5.7e-12 73.9 68 63.2
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 7.5e-12 73.6 68 63.2
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 7.5e-12 73.6 68 63.2
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 9.7e-12 73.2 54 70.4
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 1.3e-11 72.8 62 61.3
Aa31LG7G9440 Aethionema arabicum HOM05D007313 ORTHO05D005299 1.7e-11 72.4 69 62.3
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 2.2e-11 72.0 76 57.9
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 2.2e-11 72.0 76 57.9
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 2.8e-11 71.6 55 67.3
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 2.8e-11 71.6 55 67.3
AL1G40310 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 3.7e-11 71.2 70 61.4
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 3.7e-11 71.2 70 61.4
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 3.7e-11 71.2 68 61.8
ClCG01G006530 Citrullus lanatus HOM05D007313 ORTHO05D005299 4.8e-11 70.9 66 60.6
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 8.3e-11 70.1 70 60.0
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 8.3e-11 70.1 54 68.5
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 1.1e-10 69.7 56 66.1
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 1.4e-10 69.3 76 53.9
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 1.4e-10 69.3 54 68.5
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 3.1e-10 68.2 80 55.0
AT1G24600 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 4.1e-10 67.8 70 60.0
BcaC06g35248 Brassica carinata HOM05D007313 ORTHO05D005299 4.1e-10 67.8 74 56.8
C07p18250 Brassica napus HOM05D007313 ORTHO05D005299 4.1e-10 67.8 74 56.8
BolC7t42335H Brassica oleracea HOM05D007313 ORTHO05D005299 4.1e-10 67.8 74 56.8
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 5.3e-10 67.4 76 52.6
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.2e-09 66.2 76 51.3
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 1.6e-09 65.9 68 51.5
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.6e-09 65.9 76 51.3
BcaB03g14014 Brassica carinata HOM05D007313 ORTHO05D005299 2.7e-09 65.1 74 55.4
A07p12350 Brassica napus HOM05D007313 ORTHO05D005299 2.7e-09 65.1 74 55.4
BraA07t29016Z Brassica rapa HOM05D007313 ORTHO05D005299 2.7e-09 65.1 74 55.4
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 2.7e-09 65.1 85 47.1
MELO3C005274.2 Cucumis melo HOM05D007313 ORTHO05D005299 2.7e-09 65.1 66 54.5
Lj4g0008951 Lotus japonicus HOM05D007313 ORTHO05D005299 2.7e-09 65.1 63 60.3
Haze_10890 Corylus avellana HOM05D007313 ORTHO05D005299 4.5e-09 64.3 69 52.2
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 5.9e-09 63.9 85 48.2
MD16G1019400 Malus domestica HOM05D007313 ORTHO05D005299 5.9e-09 63.9 50 68.0
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 5.9e-09 63.9 58 58.6
PGSC0003DMG400029516 Solanum tuberosum HOM05D007313 ORTHO05D005299 5.9e-09 63.9 75 52.0
RcHm_v2.0_Chr4g0443131 Rosa chinensis HOM05D007313 ORTHO05D005299 1.3e-08 62.8 70 47.1
Solyc04g007990.1 Solanum lycopersicum HOM05D007313 ORTHO05D005299 1.3e-08 62.8 75 52.0
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 2.9e-08 61.6 71 49.3
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 2.9e-08 61.6 74 48.6
TPR.G18382 Trifolium pratense HOM05D008500 ORTHO05D005299 2.9e-08 61.6 71 49.3
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 5.0e-08 60.8 77 45.5
FvH4_5g17640 Fragaria vesca HOM05D008500 ORTHO05D005299 6.5e-08 60.5 78 46.2
RcHm_v2.0_Chr7g0178031 Rosa chinensis HOM05D008500 ORTHO05D005299 6.5e-08 60.5 78 46.2
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 6.5e-08 60.5 59 57.6
A09p38970 Brassica napus HOM05D007313 ORTHO05D005299 8.5e-08 60.1 69 52.2
C05p25550 Brassica napus HOM05D007313 ORTHO05D005299 8.5e-08 60.1 74 52.7
BolC5t31282H Brassica oleracea HOM05D007313 ORTHO05D005299 8.5e-08 60.1 74 52.7
CANSAT01G0361 Cannabis sativa HOM05D007313 ORTHO05D005299 8.5e-08 60.1 67 52.2
FAN08G2086 Fragaria x ananassa HOM05D008500 ORTHO05D005299 8.5e-08 60.1 78 46.2
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 8.5e-08 60.1 55 60.0
Duzib205G0189 Durio zibethinus HOM05D008500 ORTHO05D005299 1.5e-07 59.3 68 48.5
FAN18G0107 Fragaria x ananassa HOM05D008500 ORTHO05D005299 1.5e-07 59.3 78 46.2
FAN22G0875 Fragaria x ananassa HOM05D007313 ORTHO05D005299 1.5e-07 59.3 72 48.6
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 1.5e-07 59.3 75 45.3
Ca_17263_v3 Cicer arietinum L. HOM05D007313 ORTHO05D005299 1.9e-07 58.9 54 55.6
Ca_17284_v3 Cicer arietinum L. HOM05D007313 ORTHO05D005299 1.9e-07 58.9 54 55.6
FAN04G2293 Fragaria x ananassa HOM05D008500 ORTHO05D005299 1.9e-07 58.9 78 46.2
TPR.G27729 Trifolium pratense HOM05D007313 ORTHO05D005299 2.5e-07 58.5 54 53.7
BcaC05g26505 Brassica carinata HOM05D007313 ORTHO05D005299 3.2e-07 58.2 74 51.4
Nn4g24351 Nelumbo nucifera HOM05D008500 ORTHO05D005299 3.2e-07 58.2 53 54.7
Psat7g008240 Pisum sativum HOM05D007313 ORTHO05D005299 4.2e-07 57.8 54 53.7
BcaC05g26701 Brassica carinata HOM05D007313 ORTHO05D005299 7.2e-07 57.0 68 54.4
CsaV3_5G028140 Cucumis sativus L. HOM05D007313 ORTHO05D005299 7.2e-07 57.0 55 54.5
FAN12G3843 Fragaria x ananassa HOM05D007313 ORTHO05D005299 7.2e-07 57.0 72 47.2
FAN13G1653 Fragaria x ananassa HOM05D008500 ORTHO05D005299 7.2e-07 57.0 78 44.9
Glyma.07G104300 Glycine max HOM05D008500 ORTHO05D005299 7.2e-07 57.0 53 54.7
Medtr6g071040 Medicago truncatula HOM05D008500 ORTHO05D005299 7.2e-07 57.0 67 49.3
Glyma.09G173300 Glycine max HOM05D008500 ORTHO05D005299 9.4e-07 56.6 53 52.8
Lsat_1_v5_gn_8_46180 Lactuca sativa HOM05D007313 ORTHO05D005299 9.4e-07 56.6 76 43.4
Nn3g18353 Nelumbo nucifera HOM05D008500 ORTHO05D005299 1.2e-06 56.2 53 54.7
ECA233G5799 Erigeron canadensis HOM05D007313 ORTHO05D005299 1.6e-06 55.8 74 48.6
FAN07G0870 Fragaria x ananassa HOM05D007313 ORTHO05D005299 1.6e-06 55.8 71 46.5
Manes.14G157100 Manihot esculenta HOM05D008500 ORTHO05D005299 2.1e-06 55.5 55 56.4
Phvul.002G320600 Phaseolus vulgaris HOM05D007313 ORTHO05D005299 2.1e-06 55.5 48 58.3
arahy.Tifrunner.gnm1.ann1.J4XL7B Arachis hypogaea HOM05D008500 ORTHO05D005299 2.7e-06 55.1 76 48.7
Glyma.08G045300 Glycine max HOM05D007313 ORTHO05D005299 2.7e-06 55.1 52 51.9
arahy.Tifrunner.gnm1.ann1.B8M078 Arachis hypogaea HOM05D008500 ORTHO05D005299 3.6e-06 54.7 76 48.7
FvH4_4g33670 Fragaria vesca HOM05D007313 ORTHO05D005299 3.6e-06 54.7 59 54.2
Gohir.D12G270900 Gossypium hirsutum HOM05D008500 ORTHO05D005299 3.6e-06 54.7 78 46.2
Gorai.008G291300 Gossypium raimondii HOM05D008500 ORTHO05D005299 3.6e-06 54.7 70 45.7
Sed0026425 Sechium edule HOM05D007313 ORTHO05D005299 4.7e-06 54.3 71 42.3
Cpa.g.sc3.366 Carica papaya HOM05D008500 ORTHO05D005299 6.1e-06 53.9 74 51.4
QL10p031374 Quercus lobata HOM05D008500 ORTHO05D005299 8.0e-06 53.5 60 50.0


User provided reference genes

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