Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G081701 Manihot esculenta HOM05D000536 ORTHO05D001213 5.4e-41 170.6 90 100.0
Manes.15G132700 Manihot esculenta HOM05D000536 ORTHO05D001213 1.2e-29 132.9 80 87.5
Ciclev10017915m.g Citrus clementina HOM05D000536 ORTHO05D001213 6.8e-28 127.1 80 85.0
Thecc.02G289900 Theobroma cacao HOM05D000536 ORTHO05D001213 6.8e-28 127.1 80 82.5
Duzib251G0309 Durio zibethinus HOM05D000536 ORTHO05D001213 5.8e-27 124.0 80 81.2
COL.COLO4_13083 Corchorus olitorius HOM05D000001 ORTHO05D000003 7.5e-27 123.6 80 80.0
Potri.010G108700 Populus trichocarpa HOM05D000536 ORTHO05D001213 1.3e-26 122.9 80 80.0
ClCG01G006420 Citrullus lanatus HOM05D000536 ORTHO05D001213 1.7e-26 122.5 80 82.5
Haze_10924 Corylus avellana HOM05D000536 ORTHO05D001213 1.7e-26 122.5 80 80.0
Gohir.A01G149200 Gossypium hirsutum HOM05D000536 ORTHO05D001213 2.2e-26 122.1 80 80.0
Gohir.D01G141500 Gossypium hirsutum HOM05D000536 ORTHO05D001213 4.9e-26 120.9 80 80.0
Gorai.002G174400 Gossypium raimondii HOM05D000536 ORTHO05D001213 4.9e-26 120.9 80 80.0
CiPaw.05G190800 Carya illinoinensis HOM05D000536 ORTHO05D001213 6.4e-26 120.6 80 78.8
THA.LOC104822993 Tarenaya hassleriana HOM05D000536 ORTHO05D001213 6.4e-26 120.6 80 78.8
Dinv18631 Davidia involucrata HOM05D000536 ORTHO05D001213 8.3e-26 120.2 80 78.8
Dinv26246 Davidia involucrata HOM05D000536 ORTHO05D001213 8.3e-26 120.2 80 78.8
MELO3C005289.2 Cucumis melo HOM05D000536 ORTHO05D001213 1.4e-25 119.4 80 81.2
CsaV3_5G028260 Cucumis sativus L. HOM05D000536 ORTHO05D001213 1.4e-25 119.4 80 81.2
Duzib268G1889 Durio zibethinus HOM05D000536 ORTHO05D001213 1.4e-25 119.4 80 80.0
RcHm_v2.0_Chr4g0443401 Rosa chinensis HOM05D000536 ORTHO05D001213 1.4e-25 119.4 80 76.2
Sabra08G0101600 Salix brachista HOM05D000536 ORTHO05D001213 1.4e-25 119.4 80 80.0
Cpa.g.sc2.224 Carica papaya HOM05D000536 ORTHO05D001213 2.4e-25 118.6 80 80.0
Potri.008G133000 Populus trichocarpa HOM05D000536 ORTHO05D001213 3.2e-25 118.2 80 78.8
MD13G1030400 Malus domestica HOM05D000536 ORTHO05D001213 4.1e-25 117.9 80 77.5
Atru.chr11.590 Acer truncatum HOM05D000536 ORTHO05D001213 5.4e-25 117.5 80 76.2
Prupe.1G331200 Prunus persica HOM05D001584 ORTHO05D001472 9.2e-25 116.7 80 77.5
Nn4g24286 Nelumbo nucifera HOM05D000536 ORTHO05D001213 2.7e-24 115.2 83 78.3
CSS0012992 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 3.5e-24 114.8 80 73.8
Hma1.2p1_0346F.1_g131620 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 1.0e-23 113.2 80 76.2
FAN17G1849 Fragaria x ananassa HOM05D000536 ORTHO05D001213 1.3e-23 112.8 78 75.6
QL03p034564 Quercus lobata HOM05D000536 ORTHO05D001213 1.7e-23 112.5 77 76.6
Aqoxy1G00380 Aquilegia oxysepala HOM05D000536 ORTHO05D001213 5.1e-23 110.9 80 75.0
Eucgr.B02947 Eucalyptus grandis HOM05D000536 ORTHO05D001213 8.6e-23 110.2 78 74.4
MD16G1021100 Malus domestica HOM05D000536 ORTHO05D001213 1.5e-22 109.4 80 73.8
Cc11_g08070 Coffea canephora HOM05D000536 ORTHO05D001213 2.5e-22 108.6 81 74.1
FvH4_4g33881 Fragaria vesca HOM05D000536 ORTHO05D001213 2.5e-22 108.6 80 72.5
GSVIVG01011685001 Vitis vinifera HOM05D000536 ORTHO05D001213 2.5e-22 108.6 77 76.6
Actinidia12381 Actinidia chinensis HOM05D000536 ORTHO05D001213 3.3e-22 108.2 81 74.1
THA.LOC104809129 Tarenaya hassleriana HOM05D000536 ORTHO05D001213 3.3e-22 108.2 80 72.5
Ah.03g137390 Amaranthus hybridus HOM05D000536 ORTHO05D001213 5.6e-22 107.5 81 74.1
MSTRG.2143 Avicennia marina HOM05D000536 ORTHO05D001213 7.3e-22 107.1 81 71.6
CiPaw.06G049600 Carya illinoinensis HOM05D000536 ORTHO05D001213 7.3e-22 107.1 80 73.8
Nn3g18315 Nelumbo nucifera HOM05D000536 ORTHO05D001213 9.5e-22 106.7 83 71.1
QL03p034777 Quercus lobata HOM05D000536 ORTHO05D001213 9.5e-22 106.7 75 74.7
TAR622G1123 Trochodendron aralioides HOM05D000536 ORTHO05D001213 9.5e-22 106.7 74 77.0
Sc04g0005270 Simmondsia chinensis HOM05D000536 ORTHO05D001213 1.2e-21 106.3 81 74.1
TWI53G0834 Tripterygium wilfordii HOM05D000536 ORTHO05D001213 1.6e-21 105.9 80 72.5
CARHR023680 Cardamine hirsuta HOM05D000536 ORTHO05D001213 2.1e-21 105.5 80 70.0
AT1G23220 Arabidopsis thaliana HOM05D000536 ORTHO05D001213 2.8e-21 105.1 80 70.0
CANSAT01G0368 Cannabis sativa HOM05D000536 ORTHO05D001213 2.8e-21 105.1 78 74.4
Glyma.05G235900 Glycine max HOM05D000536 ORTHO05D001213 3.6e-21 104.8 84 72.6
ATR0564G375 Amborella trichopoda HOM05D000536 ORTHO05D001213 4.7e-21 104.4 80 73.8
Thhalv10009103m.g Eutrema salsugineum HOM05D000536 ORTHO05D001213 6.2e-21 104.0 80 68.8
Glyma.08G043300 Glycine max HOM05D000536 ORTHO05D001213 6.2e-21 104.0 84 71.4
Carub.0001s2281 Capsella rubella HOM05D000536 ORTHO05D001213 8.1e-21 103.6 80 68.8
Aa31LG7G7260 Aethionema arabicum HOM05D000536 ORTHO05D001213 1.4e-20 102.8 76 71.1
AL1G37010 Arabidopsis lyrata HOM05D000120 ORTHO05D001213 1.4e-20 102.8 80 68.8
BcaB03g11929 Brassica carinata HOM05D000536 ORTHO05D001213 1.4e-20 102.8 81 70.4
CAN.G574.54 Capsicum annuum HOM05D000536 ORTHO05D001213 1.4e-20 102.8 81 72.8
DCAR_007320 Daucus carota HOM05D000536 ORTHO05D001213 1.8e-20 102.4 76 75.0
vmacro10683 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 1.8e-20 102.4 79 72.2
vmacro22447 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 1.8e-20 102.4 79 72.2
Sp1g20690 Schrenkiella parvula HOM05D000536 ORTHO05D001213 2.4e-20 102.1 81 69.1
arahy.Tifrunner.gnm1.ann1.0Q9PJV Arachis hypogaea HOM05D000536 ORTHO05D001213 3.1e-20 101.7 84 71.4
arahy.Tifrunner.gnm1.ann1.5Q0AB6 Arachis hypogaea HOM05D000536 ORTHO05D001213 3.1e-20 101.7 84 71.4
A07p13950 Brassica napus HOM05D000536 ORTHO05D001213 4.0e-20 101.3 81 67.9
BraA07t29151Z Brassica rapa HOM05D000536 ORTHO05D001213 4.0e-20 101.3 81 67.9
Hund24955 Selenicereus undatus HOM05D000536 ORTHO05D001213 5.2e-20 100.9 81 71.6
C08p21800 Brassica napus HOM05D000536 ORTHO05D001213 6.8e-20 100.5 81 67.9
BraA08t34760Z Brassica rapa HOM05D000536 ORTHO05D001213 6.8e-20 100.5 81 67.9
EL10Ac6g14161 Beta vulgaris HOM05D000536 ORTHO05D001213 8.9e-20 100.1 81 70.4
BcaC07g39190 Brassica carinata HOM05D000536 ORTHO05D001213 1.2e-19 99.8 81 67.9
BolC8t49819H Brassica oleracea HOM05D000536 ORTHO05D001213 1.2e-19 99.8 81 67.9
MSTRG.13613 Avicennia marina HOM05D000536 ORTHO05D001213 1.5e-19 99.4 82 69.5
BcaC06g35028 Brassica carinata HOM05D000536 ORTHO05D001213 1.5e-19 99.4 81 66.7
C07p20500 Brassica napus HOM05D000536 ORTHO05D001213 1.5e-19 99.4 81 66.7
BolC7t42576H Brassica oleracea HOM05D000536 ORTHO05D001213 1.5e-19 99.4 81 66.7
Sed0003228 Sechium edule HOM05D000536 ORTHO05D001213 1.5e-19 99.4 80 70.0
A08p28290 Brassica napus HOM05D000536 ORTHO05D001213 2.0e-19 99.0 81 67.9
SalBow2G0934 Salvia bowleyana HOM05D001584 ORTHO05D001472 2.0e-19 99.0 82 69.5
Hund24940 Selenicereus undatus HOM05D000536 ORTHO05D001213 2.0e-19 99.0 81 69.1
BcaB03g14155 Brassica carinata HOM05D000536 ORTHO05D001213 2.6e-19 98.6 81 66.7
Lj4g0013361 Lotus japonicus HOM05D000536 ORTHO05D001213 3.4e-19 98.2 84 69.0
Oeu018608.1 Olea europaea HOM05D000536 ORTHO05D001213 5.8e-19 97.4 81 70.4
Phvul.002G319300 Phaseolus vulgaris HOM05D000536 ORTHO05D001213 7.6e-19 97.1 84 69.0
Cfa014993 Carpinus fangiana HOM05D000536 ORTHO05D001213 9.9e-19 96.7 61 80.3
PGSC0003DMG400032159 Solanum tuberosum HOM05D000536 ORTHO05D001213 1.3e-18 96.3 82 68.3
A09p41540 Brassica napus HOM05D000536 ORTHO05D001213 2.9e-18 95.1 81 65.4
C05p22450 Brassica napus HOM05D000536 ORTHO05D001213 2.9e-18 95.1 81 65.4
BraA09t39645Z Brassica rapa HOM05D000536 ORTHO05D001213 2.9e-18 95.1 81 65.4
Glyma.16G151800 Glycine max HOM05D000536 ORTHO05D001213 2.9e-18 95.1 82 64.6
Lsat_1_v5_gn_4_12901 Lactuca sativa HOM05D000536 ORTHO05D001213 2.9e-18 95.1 84 64.3
AUR62039540 Chenopodium quinoa HOM05D000536 ORTHO05D001213 3.8e-18 94.7 81 64.2
Sopen01g001470 Solanum pennellii HOM05D000536 ORTHO05D001213 3.8e-18 94.7 82 67.1
Solyc01g005460.4 Solanum lycopersicum HOM05D000536 ORTHO05D001213 6.4e-18 94.0 82 67.1
VMungo0251G2456 Vigna mungo HOM05D000536 ORTHO05D001213 6.4e-18 94.0 78 71.8
BcaC05g26232 Brassica carinata HOM05D000536 ORTHO05D001213 8.4e-18 93.6 81 64.2
BolC5t30943H Brassica oleracea HOM05D000536 ORTHO05D001213 8.4e-18 93.6 81 64.2
Medtr8g104900 Medicago truncatula HOM05D000536 ORTHO05D001213 8.4e-18 93.6 84 64.3
BcaB07g32313 Brassica carinata HOM05D000536 ORTHO05D001213 1.9e-17 92.4 81 64.2
Glyma.02G070300 Glycine max HOM05D000536 ORTHO05D001213 1.9e-17 92.4 85 64.7
MBI13_g01847_MAGBIO Magnolia biondii HOM05D000536 ORTHO05D001213 2.4e-17 92.0 96 58.3
Lalb_Chr05g0222311 Lupinus albus HOM05D000536 ORTHO05D001213 1.6e-16 89.4 83 67.5
CDE06G2033 Ceratophyllum demersum HOM05D000536 ORTHO05D001213 3.5e-16 88.2 83 60.2
HanXRQChr12g0377771 Helianthus annuus HOM05D000536 ORTHO05D001213 3.5e-16 88.2 82 59.8
PSO478G3635 Papaver somniferum HOM05D000536 ORTHO05D001213 3.5e-16 88.2 95 60.0
CDE07G1071 Ceratophyllum demersum HOM05D000536 ORTHO05D001213 4.6e-16 87.8 83 59.0
PSO017G1255 Papaver somniferum HOM05D000536 ORTHO05D001213 4.6e-16 87.8 96 59.4
Sp5g25880 Schrenkiella parvula HOM05D000536 ORTHO05D001213 7.8e-16 87.0 81 58.0
Lj2g0016195 Lotus japonicus HOM05D000536 ORTHO05D001213 2.3e-15 85.5 89 60.7
SGA_v2.0_scaffold139G35394 Striga asiatica HOM05D000536 ORTHO05D001213 2.3e-15 85.5 83 60.2
Lalb_Chr16g0387761 Lupinus albus HOM05D000536 ORTHO05D001213 6.6e-15 84.0 81 65.4
Oeu062650.1 Olea europaea HOM05D000536 ORTHO05D001213 8.7e-15 83.6 81 64.2
Nitab4.5_0000238g0050 Nicotiana tabacum HOM05D000536 ORTHO05D001213 1.9e-14 82.4 82 61.0
Phvul.004G077100 Phaseolus vulgaris HOM05D000536 ORTHO05D001213 3.3e-14 81.6 82 64.6
VMungo0464G1315 Vigna mungo HOM05D000536 ORTHO05D001213 5.6e-14 80.9 82 64.6
Rhsim09G0092200 Rhododendron simsii HOM05D000536 ORTHO05D001213 1.6e-13 79.3 62 69.4
TPR.G32674 Trifolium pratense HOM05D000536 ORTHO05D001213 6.2e-13 77.4 79 60.8
TPR.G36864 Trifolium pratense HOM05D000536 ORTHO05D001213 6.2e-13 77.4 97 51.5
Nitab4.5_0009944g0040 Nicotiana tabacum HOM05D000536 ORTHO05D001213 1.8e-12 75.9 87 56.3
Medtr1g031880 Medicago truncatula HOM05D000536 ORTHO05D001213 4.0e-12 74.7 98 54.1
HPP92_024822 Vanilla planifolia HOM05D000536 ORTHO05D001213 4.4e-11 71.2 107 45.8
HPP92_020323 Vanilla planifolia HOM05D000536 ORTHO05D001213 2.2e-10 68.9 109 45.0
HPP92_020329 Vanilla planifolia HOM05D000536 ORTHO05D001213 2.2e-10 68.9 109 45.0
HanXRQChr08g0212401 Helianthus annuus HOM05D000536 ORTHO05D001213 2.4e-09 65.5 94 47.9
SEGI_07176 Sequoiadendron giganteum HOM05D000536 ORTHO05D001213 1.0e-07 60.1 47 68.1
Lj3P866T44 Lonicera japonica HOM05D000536 ORTHO05D001213 1.3e-07 59.7 39 76.9
unitig_27.g25313 Utricularia gibba HOM05D000536 ORTHO05D001213 5.1e-07 57.8 92 50.0
Zm00001eb183270 Zea mays HOM05D000536 ORTHO05D001213 8.7e-07 57.0 54 55.6
Zm00001eb245220 Zea mays HOM05D000536 ORTHO05D001213 1.1e-06 56.6 54 55.6
Zm00001eb080560 Zea mays HOM05D000536 ORTHO05D001213 3.3e-06 55.1 48 60.4
Zm00001eb253710 Zea mays HOM05D000536 ORTHO05D001213 3.3e-06 55.1 48 62.5
Os02g0733001 Oryza sativa ssp. japonica HOM05D000536 ORTHO05D001213 4.3e-06 54.7 48 62.5


User provided reference genes

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