Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 2.5e-297 1024.6 507 100.0
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 1.2e-259 899.4 507 89.7
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 5.7e-196 688.0 503 69.8
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 6.5e-192 674.5 498 69.7
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.9e-191 672.9 512 68.2
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 3.5e-190 668.7 506 66.4
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 7.9e-190 667.5 503 66.8
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 1.1e-186 657.1 503 67.2
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 1.4e-186 656.8 515 66.0
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 1.0e-184 650.6 517 66.0
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.5e-183 644.8 505 64.2
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 2.7e-182 642.5 516 63.8
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 5.1e-181 638.3 506 64.8
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 4.3e-180 635.2 505 64.0
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 6.3e-179 631.3 505 63.6
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 3.2e-175 619.0 466 67.6
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 4.2e-175 618.6 519 61.8
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 1.0e-173 614.0 499 64.1
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.0e-173 612.5 479 64.9
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 8.8e-173 610.9 392 77.0
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 4.4e-172 608.6 494 63.0
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.3e-171 607.1 467 66.4
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.4e-170 603.6 460 65.4
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.4e-170 603.6 489 65.0
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 1.8e-170 603.2 491 63.5
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 5.3e-170 601.7 456 66.2
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 9.1e-170 600.9 456 66.2
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 9.1e-170 600.9 460 65.0
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 2.0e-169 599.7 506 62.6
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 3.5e-169 599.0 464 65.1
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.5e-169 598.6 501 62.3
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 2.9e-168 595.9 493 62.9
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 5.0e-168 595.1 505 61.0
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 8.5e-168 594.3 475 64.6
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 8.5e-168 594.3 485 62.5
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 7.2e-167 591.3 492 62.0
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 2.7e-166 589.3 439 66.7
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 1.8e-165 586.6 458 65.3
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 2.3e-165 586.3 474 63.7
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 3.0e-165 585.9 460 65.2
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.8e-165 584.3 430 66.3
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.5e-164 583.6 461 64.9
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 2.6e-164 582.8 468 65.4
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.7e-163 580.1 428 65.9
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 3.7e-163 578.9 458 64.4
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 8.2e-163 577.8 464 64.2
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 8.2e-163 577.8 492 60.6
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 4.1e-162 575.5 480 62.1
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 4.1e-162 575.5 470 63.0
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.2e-161 573.9 498 61.8
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 1.2e-161 573.9 467 63.0
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 3.5e-161 572.4 472 62.3
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 1.3e-160 570.5 497 60.4
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 1.5e-159 567.0 467 62.3
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 5.5e-159 565.1 460 62.2
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 9.4e-159 564.3 478 61.5
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.2e-158 563.9 461 62.3
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.0e-157 560.8 462 63.0
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 2.3e-157 559.7 507 59.0
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 5.2e-157 558.5 473 61.5
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 1.2e-156 557.4 479 60.5
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 7.5e-156 554.7 419 66.8
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 9.7e-156 554.3 492 58.7
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 3.7e-155 552.4 468 61.3
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 6.3e-155 551.6 470 61.3
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 8.3e-155 551.2 465 61.7
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 5.3e-154 548.5 481 60.1
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 2.0e-153 546.6 502 57.4
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.2e-152 543.1 444 62.8
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 4.2e-151 538.9 451 61.6
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 1.0e-149 534.3 451 61.6
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 1.8e-149 533.5 462 58.0
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 5.2e-149 531.9 468 58.8
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 7.5e-148 528.1 465 61.1
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 2.8e-147 526.2 354 73.4
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 1.8e-146 523.5 455 58.5
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 2.4e-146 523.1 471 59.0
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 5.4e-146 521.9 476 57.8
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 7.0e-146 521.5 467 59.7
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 1.0e-144 517.7 467 59.7
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 1.3e-144 517.3 465 61.1
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 2.3e-144 516.5 467 59.7
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 2.3e-144 516.5 462 58.0
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 6.6e-144 515.0 465 59.8
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 9.5e-143 511.1 471 58.4
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 3.0e-141 506.1 468 59.4
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 2.0e-140 503.4 479 58.0
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 1.3e-139 500.7 465 58.5
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 1.8e-138 496.9 467 58.2
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 1.8e-138 496.9 480 57.3
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.7e-136 490.3 457 60.6
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 1.0e-133 481.1 384 65.1
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 5.8e-132 475.3 339 70.2
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 8.3e-123 444.9 493 50.1
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 2.8e-118 429.9 452 51.8
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.4e-114 417.5 415 55.9
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 4.1e-114 416.0 476 48.7
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 3.5e-113 412.9 481 48.0
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 1.1e-109 401.4 334 62.0
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 3.5e-105 386.3 421 49.9
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 8.1e-102 375.2 402 48.3
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 4.4e-100 369.4 439 46.5
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 6.6e-96 355.5 326 58.3
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.8e-85 320.9 221 69.2
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.9e-75 287.0 340 50.9
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.9e-73 278.9 192 67.7
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 3.1e-69 266.9 401 39.2
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 9.4e-58 228.8 196 60.2
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 9.1e-45 185.7 214 47.2
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.4e-39 166.8 182 52.2
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 8.5e-35 152.5 320 33.4
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 5.2e-32 143.3 141 54.6
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 5.0e-27 126.7 106 55.7
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 3.7e-22 110.5 89 60.7
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 3.1e-16 90.9 105 56.2
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.5e-15 88.6 282 26.6
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 8.6e-11 72.8 299 20.4
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 8.6e-11 72.8 92 48.9
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 6.2e-09 66.6 120 27.5
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.5e-07 62.0 124 25.8
Aqoxy1G01011 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 2.0e-07 61.6 95 30.5
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 4.4e-07 60.5 124 28.2
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 4.4e-07 60.5 124 28.2
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 5.8e-07 60.1 121 28.1
Oeu052452.1 Olea europaea HOM05D005362 ORTHO05D006895 9.8e-07 59.3 161 26.1
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 1.3e-06 58.9 163 25.8
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 1.7e-06 58.5 124 27.4
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.2e-06 58.2 226 21.7
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 2.2e-06 58.2 152 26.3
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 2.2e-06 58.2 152 26.3
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 2.9e-06 57.8 155 25.2
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 2.9e-06 57.8 134 28.4
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.7e-06 57.4 145 23.4
Ah.06g194670 Amaranthus hybridus HOM05D006596 ORTHO05D008497 6.4e-06 56.6 149 28.2
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 6.4e-06 56.6 160 26.2
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.4e-06 56.6 167 23.4
Potri.009G092100 Populus trichocarpa HOM05D003056 ORTHO05D003422 6.4e-06 56.6 165 28.5
Sc08g0004870 Simmondsia chinensis HOM05D006258 ORTHO05D007961 6.4e-06 56.6 171 25.1


User provided reference genes

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