Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 5.4e-184 647.5 324 100.0
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 1.1e-123 447.2 297 77.1
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 8.0e-119 431.0 324 66.4
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.4e-115 419.5 325 66.5
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 6.5e-113 411.4 325 64.9
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 4.2e-112 408.7 323 63.8
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 8.8e-110 401.0 322 62.7
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 3.7e-108 395.6 323 62.5
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 6.3e-108 394.8 322 60.2
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.8e-107 393.3 329 62.9
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.8e-107 393.3 320 62.8
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.4e-107 392.9 322 59.9
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.4e-107 392.9 322 59.9
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 2.4e-107 392.9 322 62.4
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 3.1e-107 392.5 322 59.9
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 4.1e-107 392.1 327 62.7
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 5.3e-107 391.7 324 63.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 7.0e-107 391.3 322 64.0
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 9.1e-107 391.0 322 61.2
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.7e-106 389.4 322 63.0
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 5.9e-106 388.3 322 61.2
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 7.7e-106 387.9 329 63.8
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.7e-106 387.9 325 60.0
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.0e-105 387.5 338 61.5
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.7e-105 386.7 318 60.1
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 1.5e-104 383.6 326 62.9
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.9e-104 383.3 293 67.2
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.2e-103 380.6 315 63.2
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 2.7e-103 379.4 326 60.1
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 6.1e-103 378.3 327 60.9
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 8.0e-103 377.9 323 60.4
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.4e-102 377.1 327 62.7
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.4e-102 377.1 323 60.1
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.8e-102 376.7 333 58.3
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 2.3e-102 376.3 326 62.6
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.5e-101 373.6 323 60.1
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.5e-101 373.6 328 58.5
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.0e-101 373.2 316 63.9
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 2.0e-101 373.2 309 60.8
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 5.7e-101 371.7 330 59.7
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 7.5e-101 371.3 353 57.8
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 9.8e-101 370.9 328 58.2
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 2.8e-100 369.4 324 59.6
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 2.8e-100 369.4 320 61.2
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 3.7e-100 369.0 323 59.1
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.1e-99 367.5 329 58.7
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.8e-99 366.7 325 57.8
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 5.4e-99 365.2 324 59.6
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 7.0e-99 364.8 311 60.5
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 4.5e-98 362.1 326 57.4
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.7e-97 360.1 277 66.1
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 8.6e-97 357.8 325 58.2
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 8.6e-97 357.8 322 56.2
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 8.6e-97 357.8 277 63.2
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 2.5e-96 356.3 322 60.9
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 5.5e-96 355.1 335 57.9
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 2.1e-95 353.2 310 60.6
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 3.0e-94 349.4 323 59.4
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 6.8e-94 348.2 322 57.1
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.2e-93 347.4 328 57.6
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 2.6e-93 346.3 303 60.1
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 1.8e-91 340.1 320 56.6
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 4.1e-91 339.0 319 54.9
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 2.0e-90 336.7 317 54.9
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.7e-90 336.3 291 60.1
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 4.5e-90 335.5 328 56.4
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.3e-89 334.0 312 56.1
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.3e-89 334.0 324 54.6
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.9e-89 332.8 252 63.1
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 3.9e-89 332.4 323 54.8
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 6.6e-89 331.6 327 56.0
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 8.6e-89 331.3 322 54.0
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 8.6e-89 331.3 319 57.1
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.1e-88 330.9 324 53.7
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 7.3e-88 328.2 310 54.5
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 7.3e-88 328.2 290 58.3
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.2e-87 327.4 313 57.5
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 2.8e-87 326.2 322 53.4
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 3.6e-87 325.9 251 62.2
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 6.1e-87 325.1 289 60.2
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.8e-86 323.6 317 55.2
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 3.1e-86 322.8 300 56.3
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.0e-86 322.4 279 62.7
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.5e-85 320.5 328 53.7
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.7e-84 317.0 248 62.1
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.8e-82 308.1 323 53.3
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.3e-81 307.4 293 60.4
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 3.0e-81 306.2 337 51.9
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 8.6e-81 304.7 292 56.8
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 4.3e-80 302.4 317 53.0
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 4.3e-80 302.4 337 50.7
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 3.6e-79 299.3 352 49.7
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.8e-78 297.0 214 68.7
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 6.8e-78 295.0 247 64.0
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-77 294.3 337 50.4
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.7e-76 290.4 326 53.4
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.7e-76 290.4 282 54.6
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.2e-76 290.0 303 55.4
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 4.1e-75 285.8 338 46.4
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.1e-70 271.2 314 50.6
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 6.8e-70 268.5 357 45.9
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 2.6e-69 266.5 322 47.5
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 2.6e-69 266.5 267 50.6
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 1.1e-67 261.2 269 48.3
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.1e-67 261.2 276 48.9
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.1e-67 258.5 231 59.7
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.1e-67 258.5 231 59.7
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.3e-65 253.4 274 52.9
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 3.0e-65 253.1 271 53.1
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.3e-64 249.6 215 59.5
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 2.8e-63 246.5 172 69.2
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.2e-61 241.1 226 58.8
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 7.6e-61 238.4 276 46.0
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.9e-61 238.0 289 48.1
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 2.2e-60 236.9 240 47.1
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 3.2e-59 233.0 251 48.6
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 9.3e-59 231.5 325 45.8
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.3e-57 227.6 275 43.6
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 2.2e-52 210.3 208 55.3
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.0e-50 202.2 245 48.6
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 1.3e-47 194.5 237 46.8
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.6e-47 194.1 177 52.5
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 4.0e-46 189.5 245 48.2
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.5e-45 187.6 148 63.5
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 3.4e-45 186.4 213 50.7
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.3e-44 184.5 225 44.9
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 2.9e-44 183.3 122 69.7
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.3e-41 173.7 164 57.3
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 5.1e-41 172.6 138 63.8
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 8.7e-41 171.8 181 50.8
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 1.1e-38 164.9 283 36.4
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 9.0e-38 161.8 249 39.4
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-33 146.7 146 49.3
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.6e-31 141.0 153 54.2
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 2.1e-31 140.6 159 46.5
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.9e-28 130.2 196 42.9
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.1e-27 128.3 151 53.0
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 4.8e-23 112.8 158 48.1
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.1e-22 111.7 84 66.7
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 2.3e-17 94.0 178 36.5
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 2.2e-15 87.4 174 30.5
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 6.3e-15 85.9 68 66.2
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 6.9e-14 82.4 93 49.5
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 1.0e-09 68.6 64 46.9
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 1.1e-08 65.1 191 28.3
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 1.8e-06 57.8 36 75.0


User provided reference genes

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