Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 4.4e-113 411.4 218 100.0
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 8.9e-98 360.5 220 82.3
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.0e-93 347.1 223 76.7
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 2.3e-93 345.9 225 77.8
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 4.3e-92 341.7 223 76.7
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 7.3e-92 340.9 219 77.6
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 9.5e-92 340.5 218 77.1
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 1.6e-91 339.7 217 78.3
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 3.6e-91 338.6 219 76.3
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 4.7e-91 338.2 226 75.2
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.4e-90 336.7 223 74.4
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 8.9e-90 334.0 225 74.7
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.0e-89 332.8 217 77.0
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.6e-89 332.4 217 75.6
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.6e-89 332.4 217 76.5
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 9.8e-89 330.5 222 73.4
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 2.2e-88 329.3 248 68.5
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 2.2e-88 329.3 219 75.3
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 8.3e-88 327.4 219 74.9
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 8.3e-88 327.4 218 73.9
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.1e-87 327.0 222 73.0
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 1.4e-87 326.6 220 72.7
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.9e-87 326.2 226 72.6
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.4e-87 325.9 217 73.7
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 2.4e-87 325.9 222 72.5
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 3.2e-87 325.5 217 73.3
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 4.1e-87 325.1 220 72.7
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 7.1e-87 324.3 217 73.3
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 7.1e-87 324.3 219 74.9
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.2e-86 323.6 219 72.6
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 1.2e-86 323.6 219 74.0
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.1e-86 322.8 219 72.1
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 2.7e-86 322.4 223 71.3
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 2.7e-86 322.4 214 74.3
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 3.5e-86 322.0 216 74.1
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 4.6e-86 321.6 216 71.8
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 6.0e-86 321.2 219 71.2
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 7.8e-86 320.9 219 71.2
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.0e-85 320.5 226 69.9
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.0e-85 320.5 229 71.2
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 1.0e-85 320.5 218 73.9
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 1.3e-85 320.1 221 72.9
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 3.0e-85 318.9 226 71.7
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 5.1e-85 318.2 217 71.9
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 5.1e-85 318.2 216 72.7
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 6.6e-85 317.8 217 70.5
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 8.6e-85 317.4 219 71.7
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 1.5e-84 316.6 217 76.5
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 1.5e-84 316.6 222 71.6
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.5e-84 316.6 218 72.9
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 1.9e-84 316.2 216 72.7
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 3.3e-84 315.5 218 71.1
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 3.3e-84 315.5 225 69.3
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 4.3e-84 315.1 206 76.7
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 4.3e-84 315.1 218 72.0
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 5.6e-84 314.7 216 72.7
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 7.3e-84 314.3 219 72.1
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.2e-83 313.5 216 72.2
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 1.6e-83 313.2 216 72.7
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.6e-83 313.2 227 69.6
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 2.1e-83 312.8 220 69.5
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 2.8e-83 312.4 219 71.2
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 6.2e-83 311.2 220 70.9
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 8.1e-83 310.8 216 72.7
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 8.1e-83 310.8 214 72.9
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 1.4e-82 310.1 221 67.4
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.8e-82 309.7 216 69.0
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 3.1e-82 308.9 220 69.1
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 6.8e-82 307.8 219 69.9
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 8.9e-82 307.4 221 67.0
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 8.9e-82 307.4 217 69.6
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 1.2e-81 307.0 220 70.5
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.5e-81 306.6 221 67.4
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 2.0e-81 306.2 218 67.9
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 2.6e-81 305.8 221 67.0
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 2.6e-81 305.8 235 64.7
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 3.4e-81 305.4 221 66.1
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 4.4e-81 305.1 217 68.2
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 7.6e-81 304.3 217 69.1
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 1.7e-80 303.1 221 65.6
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 1.7e-80 303.1 220 65.9
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 1.7e-80 303.1 220 65.9
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 4.9e-80 301.6 221 65.6
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 4.9e-80 301.6 221 65.6
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 1.1e-79 300.4 227 67.4
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 1.9e-79 299.7 217 67.7
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 3.2e-79 298.9 164 84.8
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 9.2e-79 297.4 245 65.3
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 1.6e-78 296.6 221 67.4
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.6e-78 296.6 220 67.7
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 2.1e-78 296.2 161 87.0
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 2.7e-78 295.8 259 63.3
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 1.0e-77 293.9 220 67.7
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 1.3e-77 293.5 263 59.3
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 2.3e-77 292.7 216 66.7
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 3.9e-77 292.0 232 62.5
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 3.9e-77 292.0 220 67.7
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 6.6e-77 291.2 171 80.1
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 1.9e-76 289.7 210 70.5
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 4.3e-76 288.5 221 63.3
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 2.1e-75 286.2 224 64.3
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.6e-75 285.4 220 65.5
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 4.7e-75 285.0 221 65.2
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 6.2e-75 284.6 161 83.9
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 6.2e-75 284.6 228 64.9
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.8e-74 283.1 216 63.4
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 6.9e-74 281.2 252 59.5
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 2.6e-73 279.3 216 64.8
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 9.9e-73 277.3 221 62.9
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 1.2e-70 270.4 210 66.2
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.6e-70 270.0 176 75.0
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 3.9e-69 265.4 214 65.4
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 1.2e-65 253.8 222 59.5
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 5.4e-63 245.0 218 58.3
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.9e-60 236.5 191 66.5
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 9.6e-60 234.2 123 88.6
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.5e-57 226.9 132 76.5
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 1.3e-56 223.8 238 49.2
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 1.9e-55 219.9 219 53.0
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 5.5e-55 218.4 116 87.9
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.5e-52 209.5 225 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 2.4e-50 203.0 245 46.9
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 3.8e-48 195.7 207 48.8
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 8.4e-48 194.5 249 45.8
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 9.0e-42 174.5 100 82.0
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 7.6e-41 171.4 158 55.1
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 9.3e-39 164.5 251 37.1
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 3.7e-35 152.5 182 48.4
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 1.4e-26 124.0 248 36.7
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 7.2e-15 85.1 43 90.7
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 6.3e-11 72.0 84 51.2
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.1e-10 71.2 48 72.9
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.2e-09 67.8 38 78.9
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 2.0e-09 67.0 38 76.3
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 1.9e-07 60.5 205 27.8
Eucgr.A02714 Eucalyptus grandis HOM05D001916 ORTHO05D003272 7.2e-07 58.5 114 33.3
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 1.6e-06 57.4 162 25.3
Thhalv10028764m.g Eutrema salsugineum HOM05D001916 ORTHO05D003272 2.1e-06 57.0 198 25.3
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.7e-06 55.8 28 85.7
unitig_0.g2466 Utricularia gibba HOM05D001916 ORTHO05D003272 4.7e-06 55.8 175 25.7


User provided reference genes

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