Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 1.9e-161 572.4 280 100.0
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 4.7e-67 258.8 238 60.1
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 5.4e-63 245.4 256 52.3
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 1.2e-62 244.2 276 54.7
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 5.4e-55 218.8 276 50.7
Cpa.g.sc166.5 Carica papaya HOM05D008587 ORTHO05D010485 7.7e-54 214.9 238 50.4
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 1.5e-52 210.7 282 45.7
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 3.4e-49 199.5 276 45.7
Gohir.D06G142700 Gossypium hirsutum HOM05D008587 ORTHO05D010485 1.9e-44 183.7 285 42.8
Gorai.010G166500 Gossypium raimondii HOM05D008587 ORTHO05D010485 2.1e-43 180.3 285 42.5
Gohir.A06G137500 Gossypium hirsutum HOM05D008587 ORTHO05D010485 1.8e-42 177.2 286 42.7
TWI73G0974 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 2.2e-40 170.2 254 39.8
Cfa000946 Carpinus fangiana HOM05D008587 ORTHO05D010485 3.7e-40 169.5 286 39.5
Duzib235G1124 Durio zibethinus HOM05D008587 ORTHO05D010485 3.7e-40 169.5 321 39.6
TWI73G0910 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 4.6e-38 162.5 267 37.8
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 6.0e-38 162.2 246 43.1
Prupe.4G080600 Prunus persica HOM05D008587 ORTHO05D010485 1.3e-37 161.0 265 40.0
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 3.0e-37 159.8 214 43.0
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 3.0e-37 159.8 214 43.0
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 3.0e-37 159.8 214 43.0
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 3.9e-37 159.5 214 43.0
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 3.9e-37 159.5 214 43.0
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 5.0e-37 159.1 214 42.5
Thecc.06G150600 Theobroma cacao HOM05D008587 ORTHO05D010485 3.3e-36 156.4 296 39.5
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 4.3e-36 156.0 240 40.4
Carub.0004s1621 Capsella rubella HOM05D008587 ORTHO05D010485 5.6e-36 155.6 212 45.3
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 7.3e-36 155.2 236 38.1
Cfa000945 Carpinus fangiana HOM05D008587 ORTHO05D010485 9.5e-36 154.8 295 40.0
COL.COLO4_31072 Corchorus olitorius HOM05D008587 ORTHO05D010485 2.8e-35 153.3 281 41.3
AL4G30510 Arabidopsis lyrata HOM05D008587 ORTHO05D010485 3.6e-35 152.9 214 42.1
Haze_05597 Corylus avellana HOM05D008587 ORTHO05D010485 8.1e-35 151.8 302 38.7
Aa31LG10G6860 Aethionema arabicum HOM05D008587 ORTHO05D010485 1.8e-34 150.6 224 41.1
Haze_05596 Corylus avellana HOM05D008587 ORTHO05D010485 2.3e-34 150.2 285 40.0
CARHR128630 Cardamine hirsuta HOM05D008587 ORTHO05D010485 1.5e-33 147.5 254 37.4
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 2.0e-33 147.1 238 38.7
QL05p058191 Quercus lobata HOM05D008587 ORTHO05D010485 8.3e-32 141.7 289 37.4
CiPaw.09G123400 Carya illinoinensis HOM05D008587 ORTHO05D010485 4.1e-31 139.4 161 47.8
FAN16G1258 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.9e-28 130.6 284 35.6
RcHm_v2.0_Chr5g0014151 Rosa chinensis HOM05D014465 ORTHO05D010485 2.8e-27 126.7 273 35.5
FAN11G1722 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.1e-26 124.8 292 34.6
FAN16G1026 Fragaria x ananassa HOM05D014465 ORTHO05D010485 3.1e-26 123.2 267 38.2
FvH4_3g05550 Fragaria vesca HOM05D014465 ORTHO05D010485 1.2e-25 121.3 292 34.6
FvH4_3g05540 Fragaria vesca HOM05D014465 ORTHO05D010485 2.0e-25 120.6 283 34.6
Cfa000943 Carpinus fangiana HOM05D008587 ORTHO05D010485 2.6e-25 120.2 146 48.6
RcHm_v2.0_Chr5g0014161 Rosa chinensis HOM05D014465 ORTHO05D010485 4.9e-24 115.9 263 36.1
QL05p058118 Quercus lobata HOM05D008587 ORTHO05D010485 4.1e-23 112.8 148 45.3
CiPaw.09G123600 Carya illinoinensis HOM05D008587 ORTHO05D010485 3.5e-22 109.8 209 38.8
CANSAT35G0142 Cannabis sativa HOM05D008587 ORTHO05D010485 1.4e-18 97.8 219 32.4
Lalb_Chr07g0188571 Lupinus albus HOM05D018405 ORTHO05D010485 2.6e-17 93.6 287 29.6
Glyma.05G130500 Glycine max HOM05D018405 ORTHO05D019811 9.3e-15 85.1 269 29.0
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 2.7e-14 83.6 147 34.0
FAN25G0862 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.3e-13 81.3 297 26.6
FAN25G2871 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.3e-13 81.3 297 26.6
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 3.0e-13 80.1 141 36.2
Sopen02g019500 Solanum pennellii HOM05D007839 ORTHO05D009924 3.0e-13 80.1 147 36.1
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 5.1e-13 79.3 147 36.1
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 1.1e-12 78.2 118 39.0
Glyma.08G085200 Glycine max HOM05D018405 ORTHO05D010485 1.1e-12 78.2 290 27.2
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 5.6e-12 75.9 118 41.5
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 7.3e-12 75.5 153 35.3
GSVIVG01021453001 Vitis vinifera HOM05D008587 ORTHO05D010485 7.3e-12 75.5 214 27.6
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 1.3e-11 74.7 205 30.7
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 4.8e-11 72.8 153 34.6
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 4.8e-11 72.8 146 37.0
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 6.2e-11 72.4 143 34.3
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 6.2e-11 72.4 147 36.7
Gohir.D06G142600 Gossypium hirsutum HOM05D007839 ORTHO05D009924 8.1e-11 72.0 199 29.6
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 1.4e-10 71.2 88 38.6
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 1.4e-10 71.2 155 28.4
GSVIVG01021456001 Vitis vinifera HOM05D031117 ORTHO05D051630 1.4e-10 71.2 238 29.0
Gorai.010G166400 Gossypium raimondii HOM05D007839 ORTHO05D009924 3.1e-10 70.1 199 29.1
arahy.Tifrunner.gnm1.ann1.EDFF2E Arachis hypogaea HOM05D007839 ORTHO05D009924 4.0e-10 69.7 98 39.8
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 5.3e-10 69.3 147 35.4
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 6.9e-10 68.9 141 32.6
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 6.9e-10 68.9 126 34.9
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 6.9e-10 68.9 94 44.7
Aa31LG10G6870 Aethionema arabicum HOM05D007839 ORTHO05D009924 1.2e-09 68.2 133 32.3
Gohir.A06G137400 Gossypium hirsutum HOM05D007839 ORTHO05D009924 1.2e-09 68.2 199 28.6
CANSAT35G0562 Cannabis sativa HOM05D007839 ORTHO05D009924 2.6e-09 67.0 202 28.2
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 2.6e-09 67.0 100 40.0
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 2.6e-09 67.0 93 45.2
BcaB02g09533 Brassica carinata HOM05D007839 ORTHO05D009924 3.4e-09 66.6 134 33.6
BcaB06g28781 Brassica carinata HOM05D008587 ORTHO05D010485 3.4e-09 66.6 190 32.1
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 3.4e-09 66.6 154 29.2
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 3.4e-09 66.6 144 31.9
Prupe.4G080500 Prunus persica HOM05D007839 ORTHO05D009924 3.4e-09 66.6 192 29.7
Duzib235G0881 Durio zibethinus HOM05D007839 ORTHO05D009924 5.8e-09 65.9 199 27.6
CsaV3_6G051740 Cucumis sativus L. HOM05D007839 ORTHO05D009924 7.6e-09 65.5 152 34.9
Phvul.006G164900 Phaseolus vulgaris HOM05D007839 ORTHO05D009924 9.9e-09 65.1 84 40.5
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 1.3e-08 64.7 103 39.8
MELO3C035710.2 Cucumis melo HOM05D030426 ORTHO05D029164 1.3e-08 64.7 108 35.2
BcaC02g11515 Brassica carinata HOM05D007839 ORTHO05D009924 2.2e-08 63.9 145 31.7
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 2.2e-08 63.9 163 29.4
Sed0013878 Sechium edule HOM05D030426 ORTHO05D029164 2.2e-08 63.9 129 31.8
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 2.9e-08 63.5 146 31.5
CsaV3_1G032450 Cucumis sativus L. HOM05D030426 ORTHO05D029164 2.9e-08 63.5 108 35.2
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.9e-08 63.5 76 42.1
PGSC0003DMG400021096 Solanum tuberosum HOM05D007839 ORTHO05D009924 2.9e-08 63.5 119 36.1
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 3.8e-08 63.2 94 42.6
Sabra04G0043100 Salix brachista HOM05D007839 ORTHO05D009924 3.8e-08 63.2 66 48.5
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 4.9e-08 62.8 134 29.9
Sed0021932 Sechium edule HOM05D030426 ORTHO05D029164 4.9e-08 62.8 129 31.0
THA.LOC104814297 Tarenaya hassleriana HOM05D007839 ORTHO05D009924 4.9e-08 62.8 133 31.6
VMungo0251G0730 Vigna mungo HOM05D018405 ORTHO05D019811 8.4e-08 62.0 283 28.3
ATR1091G017 Amborella trichopoda HOM05D007839 ORTHO05D009924 1.1e-07 61.6 108 39.8
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 1.1e-07 61.6 147 34.7
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 1.4e-07 61.2 141 31.9
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 1.4e-07 61.2 109 38.5
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 1.9e-07 60.8 144 33.3
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 1.9e-07 60.8 141 31.2
AL4G30500 Arabidopsis lyrata HOM05D007839 ORTHO05D009924 2.4e-07 60.5 130 30.0
arahy.Tifrunner.gnm1.ann1.9ZW3TV Arachis hypogaea HOM05D054726 ORTHO05D019811 2.4e-07 60.5 223 26.0
Sp4g16790 Schrenkiella parvula HOM05D007839 ORTHO05D009924 3.2e-07 60.1 134 29.9
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 4.2e-07 59.7 102 38.2
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 4.2e-07 59.7 195 31.8
Phvul.002G193400 Phaseolus vulgaris HOM05D018405 ORTHO05D019811 4.2e-07 59.7 186 31.2
A05p11150 Brassica napus HOM05D007839 ORTHO05D009924 1.2e-06 58.2 127 30.7
BraA05t20061Z Brassica rapa HOM05D007839 ORTHO05D009924 1.2e-06 58.2 127 30.7
AT2G34530 Arabidopsis thaliana HOM05D007839 ORTHO05D009924 1.6e-06 57.8 129 29.5
BolC4t27853H Brassica oleracea HOM05D007839 ORTHO05D009924 1.6e-06 57.8 122 32.0
BcaB06g28780 Brassica carinata HOM05D007839 ORTHO05D009924 3.5e-06 56.6 129 30.2
C04p14500 Brassica napus HOM05D007839 ORTHO05D009924 3.5e-06 56.6 123 32.5
C04p63860 Brassica napus HOM05D007839 ORTHO05D009924 3.5e-06 56.6 137 30.7
BolC4t23033H Brassica oleracea HOM05D007839 ORTHO05D009924 3.5e-06 56.6 123 32.5
BraA04t18149Z Brassica rapa HOM05D007839 ORTHO05D009924 3.5e-06 56.6 137 30.7
ClCG03G006870 Citrullus lanatus HOM05D027331 ORTHO05D028994 3.5e-06 56.6 119 32.8
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 6.0e-06 55.8 144 30.6
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 6.0e-06 55.8 148 32.4
MBI07_g35861_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 6.0e-06 55.8 58 44.8


User provided reference genes

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