Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 2.1e-152 542.3 278 100.0
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.3e-138 496.5 278 89.6
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 2.3e-138 495.7 250 94.0
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 6.6e-138 494.2 253 92.9
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 6.6e-138 494.2 250 93.6
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.1e-137 493.4 289 88.2
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 1.5e-137 493.0 257 92.6
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 1.5e-137 493.0 283 90.1
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 1.9e-137 492.7 249 94.0
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 5.6e-137 491.1 281 90.7
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 5.6e-137 491.1 281 90.7
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 9.5e-137 490.3 251 92.4
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 9.5e-137 490.3 278 88.1
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 1.2e-136 490.0 284 89.1
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 1.6e-136 489.6 251 92.8
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.6e-136 489.6 253 92.5
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 4.7e-136 488.0 290 88.6
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 1.8e-135 486.1 278 88.8
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 2.3e-135 485.7 251 91.6
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 2.3e-135 485.7 251 92.4
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 3.0e-135 485.3 248 93.1
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 3.0e-135 485.3 249 93.2
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 3.0e-135 485.3 251 92.4
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 3.0e-135 485.3 280 88.2
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 4.0e-135 485.0 249 93.2
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 4.0e-135 485.0 274 90.5
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 4.0e-135 485.0 278 89.2
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.5e-134 483.0 250 92.0
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 2.0e-134 482.6 252 90.1
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 2.6e-134 482.3 250 91.6
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 2.6e-134 482.3 250 91.6
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 2.6e-134 482.3 278 88.5
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.4e-134 481.9 278 89.6
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 4.4e-134 481.5 251 91.2
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 5.8e-134 481.1 250 90.8
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 5.8e-134 481.1 279 89.6
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 7.5e-134 480.7 283 87.3
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 9.8e-134 480.3 253 90.1
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 1.3e-133 479.9 249 91.6
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.3e-133 479.9 248 92.3
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 1.3e-133 479.9 278 84.5
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.3e-133 479.9 249 90.0
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 1.7e-133 479.6 249 91.2
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 1.7e-133 479.6 250 90.8
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.7e-133 479.6 278 85.6
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.9e-133 478.8 244 94.7
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 2.9e-133 478.8 251 91.2
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.9e-133 478.8 251 91.2
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.9e-133 478.8 251 91.2
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 2.9e-133 478.8 278 87.1
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 2.9e-133 478.8 279 88.5
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 3.7e-133 478.4 252 90.5
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 3.7e-133 478.4 251 91.6
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 8.3e-133 477.2 250 90.8
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 8.3e-133 477.2 251 91.2
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.1e-132 476.9 249 91.2
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.1e-132 476.9 272 89.3
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.4e-132 476.5 278 85.3
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.4e-132 476.5 242 94.2
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.4e-132 476.5 251 90.8
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.9e-132 476.1 286 86.7
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 1.9e-132 476.1 251 90.0
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 1.9e-132 476.1 251 90.0
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 1.9e-132 476.1 281 87.5
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 2.4e-132 475.7 249 90.8
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 2.4e-132 475.7 285 86.7
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 4.1e-132 474.9 278 84.9
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 5.4e-132 474.6 250 90.4
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 7.0e-132 474.2 250 90.0
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 7.0e-132 474.2 249 89.6
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 9.2e-132 473.8 249 90.8
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 1.2e-131 473.4 252 88.9
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 2.7e-131 472.2 254 87.8
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.7e-131 472.2 278 86.3
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 2.7e-131 472.2 249 90.0
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 4.6e-131 471.5 249 90.0
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 4.6e-131 471.5 249 89.6
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 6.0e-131 471.1 253 88.9
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 1.0e-130 470.3 249 89.6
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.3e-130 469.9 248 88.7
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 2.3e-130 469.2 299 83.3
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 3.9e-130 468.4 249 89.2
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 5.0e-130 468.0 250 88.0
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 8.6e-130 467.2 249 89.2
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.9e-129 466.1 246 89.8
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 3.3e-129 465.3 247 88.7
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 1.1e-127 460.3 249 88.4
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 1.2e-126 456.8 250 87.6
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 2.7e-123 445.7 348 67.2
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 3.5e-123 445.3 290 81.7
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 2.3e-122 442.6 247 85.8
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 6.6e-122 441.0 248 84.7
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.2e-120 436.8 249 85.9
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 6.2e-120 434.5 223 93.3
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.4e-119 433.3 247 83.4
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 6.8e-119 431.0 252 83.3
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 7.5e-118 427.6 228 90.4
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 1.3e-117 426.8 246 82.1
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 3.0e-114 415.6 242 81.8
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 4.4e-110 401.7 219 88.6
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 3.8e-109 398.7 244 77.0
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 7.8e-99 364.4 191 92.7
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 3.1e-95 352.4 245 69.8
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 6.9e-95 351.3 190 90.0
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.3e-89 332.4 171 94.2
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.3e-88 330.5 171 93.6
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 2.1e-88 329.7 181 90.1
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.2e-85 319.7 168 92.3
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.6e-83 313.5 195 86.2
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 1.3e-82 310.5 183 84.2
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 4.9e-77 292.0 183 77.0
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.0e-74 282.7 164 84.8
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.3e-73 279.3 164 82.3
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 9.7e-73 277.7 145 93.8
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 9.7e-73 277.7 164 83.5
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 4.5e-70 268.9 147 89.8
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.3e-69 267.3 155 86.5
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.1e-68 264.2 155 85.8
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.9e-68 263.5 173 74.6
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-67 260.8 213 65.7
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.7e-67 259.6 142 86.6
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 2.0e-65 253.4 156 80.8
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 1.9e-60 236.9 148 80.4
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.0e-53 214.5 190 55.3
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 8.5e-53 211.5 141 76.6
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.1e-51 206.8 151 70.9
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 3.6e-43 179.5 167 61.1
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 4.8e-40 169.1 93 86.0
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 2.2e-32 143.7 76 93.4
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 3.1e-31 139.8 87 85.1
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 2.3e-29 133.7 194 45.4
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 3.6e-27 126.3 71 83.1
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.1e-23 114.8 93 62.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.8e-18 97.4 55 80.0
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 5.2e-18 95.9 55 78.2
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 6.4e-16 89.0 46 84.8
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 3.2e-15 86.7 50 78.0
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 1.6e-06 57.8 55 54.5


User provided reference genes

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