Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G066851 Manihot esculenta HOM05D042031 ORTHO05D033335 6.4e-70 267.7 177 100.0
Glyma.05G128051 Glycine max HOM05D000021 ORTHO05D011302 4.1e-16 89.0 79 58.2
Haze_05541 Corylus avellana HOM05D000021 ORTHO05D000010 5.8e-15 85.1 84 52.4
CsaV3_6G051540 Cucumis sativus L. HOM05D000021 ORTHO05D000010 6.1e-12 75.1 79 48.1
Oeu040959.2 Olea europaea HOM05D000021 ORTHO05D000010 1.3e-11 73.9 71 49.3
SGA_v2.0_scaffold51G18630 Striga asiatica HOM05D000021 ORTHO05D000010 1.9e-10 70.1 85 44.7
Lj4g0015843 Lotus japonicus HOM05D000021 ORTHO05D000010 2.5e-10 69.7 87 42.5
CAN.G257.8 Capsicum annuum HOM05D000021 ORTHO05D000010 3.3e-10 69.3 83 43.4
Os06g0185966 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 3.3e-10 69.3 69 49.3
Peaxi162Scf00320g00619 Petunia axillaris HOM05D000021 ORTHO05D000010 1.6e-09 67.0 83 42.2
Manes.17G067300 Manihot esculenta HOM05D000021 ORTHO05D000010 4.1e-08 62.4 85 43.5
Cc07_g16440 Coffea canephora HOM05D000071 ORTHO05D000029 6.9e-08 61.6 95 41.1
TPR.G40422 Trifolium pratense HOM05D000029 ORTHO05D002519 1.2e-07 60.8 107 37.4
CSS0041362 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.6e-07 59.7 96 41.7
Eucgr.D00318 Eucalyptus grandis HOM05D000021 ORTHO05D000010 2.6e-07 59.7 86 37.2
SEGI_10127 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 2.6e-07 59.7 87 41.4
VMungo0720G1122 Vigna mungo HOM05D000311 ORTHO05D000183 2.6e-07 59.7 89 40.4
Ciclev10013948m.g Citrus clementina HOM05D000021 ORTHO05D000010 3.4e-07 59.3 107 41.1
CARHR145220 Cardamine hirsuta HOM05D000940 ORTHO05D000782 4.5e-07 58.9 110 30.0
Ciclev10027022m.g Citrus clementina HOM05D000053 ORTHO05D000448 5.9e-07 58.5 113 35.4
Gohir.A13G202050 Gossypium hirsutum HOM05D000311 ORTHO05D000183 5.9e-07 58.5 115 36.5
Glyma.18G273000 Glycine max HOM05D000311 ORTHO05D000183 7.7e-07 58.2 96 38.5
Rhsim13G0192900 Rhododendron simsii HOM05D000021 ORTHO05D000010 7.7e-07 58.2 86 38.4
Solyc02g070910.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 1.0e-06 57.8 85 35.3
CiPaw.10G093700 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.3e-06 57.4 37 70.3
Rhsim07G0133500 Rhododendron simsii HOM05D000021 ORTHO05D000010 1.3e-06 57.4 115 31.3
Cfa012628 Carpinus fangiana HOM05D000311 ORTHO05D000183 1.7e-06 57.0 87 41.4
Zm00001eb278310 Zea mays HOM05D000021 ORTHO05D000010 1.7e-06 57.0 70 44.3
Actinidia16728 Actinidia chinensis HOM05D000021 ORTHO05D000010 2.2e-06 56.6 87 35.6
Ah.07g206350 Amaranthus hybridus HOM05D000071 ORTHO05D000029 2.2e-06 56.6 88 38.6
arahy.Tifrunner.gnm1.ann1.0WT4Y2 Arachis hypogaea HOM05D001169 ORTHO05D001002 2.9e-06 56.2 111 34.2
A08p14170 Brassica napus HOM05D042031 ORTHO05D033335 3.8e-06 55.8 90 34.4
C05p15660 Brassica napus HOM05D001506 ORTHO05D000455 3.8e-06 55.8 105 37.1
BraA08t33411Z Brassica rapa HOM05D042031 ORTHO05D033335 3.8e-06 55.8 90 34.4
Manes.17G067050 Manihot esculenta HOM05D000021 ORTHO05D000010 5.0e-06 55.5 85 42.4
Glyma.16G174600 Glycine max HOM05D000071 ORTHO05D000029 6.5e-06 55.1 89 34.8
THA.LOC104827727 Tarenaya hassleriana HOM05D000021 ORTHO05D000010 6.5e-06 55.1 78 39.7
TPR.G26944 Trifolium pratense HOM05D000106 ORTHO05D000160 6.5e-06 55.1 89 39.3
Lsat_1_v5_gn_1_31421 Lactuca sativa HOM05D000311 ORTHO05D000183 8.5e-06 54.7 124 29.0
MBI15_g15982_MAGBIO Magnolia biondii HOM05D000053 ORTHO05D000448 8.5e-06 54.7 72 38.9


User provided reference genes

Program Settings