Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 2.2e-126 455.7 232 100.0
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.0e-93 344.4 233 76.8
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 7.8e-92 340.9 233 76.0
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.0e-91 340.5 236 74.2
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 1.3e-91 340.1 232 72.8
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.7e-91 339.7 233 75.5
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 2.3e-91 339.3 229 72.5
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 5.0e-91 338.2 214 79.0
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 5.0e-91 338.2 229 74.2
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.9e-90 336.3 230 74.8
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 2.5e-90 335.9 225 74.2
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 5.6e-90 334.7 230 73.0
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.6e-89 333.2 219 74.9
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.6e-89 333.2 232 72.8
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.8e-89 332.4 221 76.5
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 8.0e-89 330.9 219 74.9
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 2.3e-88 329.3 233 73.8
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 4.0e-88 328.6 219 74.4
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.0e-88 328.6 223 75.3
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.2e-88 328.2 227 73.1
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 6.8e-88 327.8 227 72.7
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.8e-88 327.8 227 73.1
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 6.8e-88 327.8 219 73.5
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.2e-87 327.0 219 74.0
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.2e-87 327.0 236 72.5
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.2e-87 327.0 233 70.4
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.0e-87 326.2 221 76.9
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 2.0e-87 326.2 219 75.3
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 2.6e-87 325.9 225 73.8
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 2.6e-87 325.9 209 79.4
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.6e-87 325.9 217 72.8
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 3.4e-87 325.5 233 70.4
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 7.5e-87 324.3 207 77.8
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 7.5e-87 324.3 233 70.8
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 7.5e-87 324.3 217 73.3
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 9.8e-87 323.9 213 76.5
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.3e-86 323.6 233 70.0
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.2e-86 322.8 229 71.2
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.2e-86 322.8 234 69.2
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.9e-86 322.4 236 72.9
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 3.7e-86 322.0 216 73.1
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.7e-86 322.0 220 74.1
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.9e-86 321.6 216 74.1
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 6.4e-86 321.2 221 72.9
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 8.3e-86 320.9 221 72.4
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.4e-85 320.1 226 72.1
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.4e-85 320.1 230 71.7
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.8e-85 319.7 218 73.4
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 2.4e-85 319.3 229 71.6
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 2.4e-85 319.3 221 73.3
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.4e-85 319.3 235 71.5
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 3.2e-85 318.9 230 70.4
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.2e-85 318.9 216 73.6
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 5.4e-85 318.2 230 69.1
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 7.0e-85 317.8 219 73.1
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 9.2e-85 317.4 204 76.5
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.2e-84 317.0 223 71.3
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.2e-84 317.0 257 65.8
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 1.6e-84 316.6 231 68.8
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.6e-84 316.6 227 70.0
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 2.0e-84 316.2 226 71.2
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 2.7e-84 315.8 230 68.7
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 3.5e-84 315.5 220 71.8
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 3.5e-84 315.5 229 71.6
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 4.6e-84 315.1 211 73.9
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 5.9e-84 314.7 222 71.6
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 5.9e-84 314.7 235 69.4
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 5.9e-84 314.7 235 71.5
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 5.9e-84 314.7 237 68.8
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 7.8e-84 314.3 243 67.5
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 7.8e-84 314.3 271 63.8
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.0e-83 313.9 220 73.2
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.7e-83 313.2 230 69.6
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.7e-83 313.2 235 68.9
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 2.3e-83 312.8 234 66.7
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 3.0e-83 312.4 215 72.6
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 3.0e-83 312.4 223 73.1
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 3.0e-83 312.4 225 71.1
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 3.9e-83 312.0 219 68.0
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 6.6e-83 311.2 215 72.1
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 8.6e-83 310.8 211 70.6
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 8.6e-83 310.8 207 73.9
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.5e-82 310.1 204 75.5
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.5e-82 310.1 204 75.5
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.5e-82 310.1 229 69.4
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.9e-82 309.7 239 68.2
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.5e-82 309.3 223 71.7
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 4.3e-82 308.5 223 70.9
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 4.3e-82 308.5 217 70.0
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 4.3e-82 308.5 218 69.3
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 4.3e-82 308.5 222 69.8
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 7.3e-82 307.8 235 65.5
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 7.3e-82 307.8 215 71.2
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.6e-81 306.6 235 67.2
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 2.1e-81 306.2 233 67.8
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 2.8e-81 305.8 234 65.4
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 2.8e-81 305.8 234 65.4
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 6.2e-81 304.7 225 69.8
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.4e-80 303.5 208 71.6
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.8e-80 303.1 223 69.5
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 2.3e-80 302.8 241 67.6
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 2.3e-80 302.8 247 65.2
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.1e-80 302.4 219 68.9
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 4.0e-80 302.0 221 69.7
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 2.6e-79 299.3 217 67.3
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 3.4e-79 298.9 229 66.8
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 5.8e-79 298.1 218 69.3
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 7.5e-79 297.7 202 72.3
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.9e-78 295.0 328 52.1
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.9e-77 293.1 215 66.5
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.9e-77 293.1 221 66.5
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 6.0e-76 288.1 221 68.3
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.3e-75 287.0 257 59.5
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 6.6e-75 284.6 212 67.0
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.5e-74 283.5 235 66.0
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.7e-73 278.5 218 65.6
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.8e-72 276.6 169 82.2
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 6.8e-72 274.6 220 66.4
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 2.0e-71 273.1 219 65.3
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.7e-70 270.0 236 63.6
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 2.2e-70 269.6 239 61.1
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.9e-70 268.5 232 62.9
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 8.3e-70 267.7 199 65.3
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 4.6e-68 261.9 171 76.0
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-67 260.4 162 80.9
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 8.1e-65 251.1 229 58.5
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 8.1e-65 251.1 219 62.1
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 9.2e-61 237.7 218 54.1
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.0e-59 234.2 163 69.9
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.3e-59 233.0 206 59.2
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 5.1e-59 231.9 176 60.2
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.1e-58 230.7 235 51.1
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 5.6e-58 228.4 145 79.3
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.1e-57 226.5 173 68.2
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 4.7e-57 225.3 228 51.3
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 2.0e-55 219.9 160 68.8
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 2.0e-55 219.9 241 46.9
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 4.4e-55 218.8 120 86.7
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.3e-54 217.2 171 64.9
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 6.4e-54 214.9 120 86.7
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.4e-53 213.8 117 87.2
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.0e-47 193.4 120 74.2
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.4e-45 187.2 150 64.7
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 1.9e-45 186.8 217 45.2
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 9.3e-45 184.5 104 81.7
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 9.3e-45 184.5 217 51.6
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.0e-43 181.0 217 46.1
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 6.2e-41 171.8 303 38.3
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.9e-35 152.5 178 50.6
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 4.3e-34 149.1 186 44.1
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.9e-30 136.3 125 57.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 2.9e-30 136.3 81 81.5
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 9.3e-29 131.3 100 66.0
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 5.7e-26 122.1 75 80.0
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 9.7e-26 121.3 159 48.4
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 6.3e-25 118.6 68 80.9
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 6.9e-24 115.2 167 43.7
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 3.8e-22 109.4 109 56.9
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.9e-21 107.1 101 55.4
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 3.6e-20 102.8 67 73.1
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 3.6e-20 102.8 101 52.5
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.0e-19 101.3 59 81.4
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.4e-19 100.9 176 35.8
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 3.9e-19 99.4 137 42.3
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 1.9e-18 97.1 81 60.5
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.5e-18 96.7 238 33.6
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 9.7e-18 94.7 96 56.2
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.6e-15 86.7 88 47.7
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 9.4e-13 78.2 79 51.9
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.2e-12 77.8 175 30.9
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.4e-11 74.3 54 66.7
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 3.7e-09 66.2 52 65.4
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 1.4e-08 64.3 40 72.5
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.9e-07 58.9 34 70.6
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 6.5e-06 55.5 122 36.1


User provided reference genes

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