Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.0e-160 570.1 295 100.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 8.5e-136 487.3 304 84.9
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.7e-99 366.7 246 76.0
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.7e-99 366.7 246 76.0
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 6.4e-99 364.8 308 65.6
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 7.0e-98 361.3 245 73.9
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.2e-97 360.5 245 75.1
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 6.0e-97 358.2 312 62.5
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.7e-96 356.7 314 63.7
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.7e-96 356.7 329 61.1
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 5.1e-96 355.1 247 74.9
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 6.6e-96 354.8 316 63.6
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 6.6e-96 354.8 287 66.2
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.1e-95 354.0 297 64.3
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.1e-95 354.0 287 66.2
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.1e-95 354.0 284 65.5
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 1.5e-95 353.6 291 66.0
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.5e-95 352.8 243 74.1
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.5e-95 352.8 276 65.9
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.5e-95 352.8 278 67.6
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 4.3e-95 352.1 311 62.4
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 4.3e-95 352.1 297 64.3
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 4.3e-95 352.1 307 63.5
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 7.3e-95 351.3 320 64.1
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 9.5e-95 350.9 274 65.0
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.2e-94 350.5 317 61.2
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.8e-94 349.4 297 64.6
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.6e-94 349.0 286 67.1
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.6e-94 349.0 286 67.1
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 3.6e-94 349.0 272 64.7
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 4.7e-94 348.6 287 65.9
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 4.7e-94 348.6 307 62.2
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 4.7e-94 348.6 254 71.3
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 6.2e-94 348.2 310 63.5
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-93 347.4 286 66.8
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.8e-93 346.7 308 60.7
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.8e-93 346.7 251 70.9
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.1e-93 345.9 320 60.6
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 4.0e-93 345.5 269 64.3
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 5.2e-93 345.1 246 69.5
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 6.8e-93 344.7 252 70.6
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 6.8e-93 344.7 279 65.9
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 8.9e-93 344.4 323 59.8
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 8.9e-93 344.4 269 68.0
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.5e-92 343.6 289 64.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.6e-92 342.8 280 66.8
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 3.4e-92 342.4 246 70.3
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.4e-92 342.4 242 71.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 4.4e-92 342.0 246 70.3
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 7.5e-92 341.3 278 62.6
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 9.9e-92 340.9 289 63.3
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.3e-91 340.5 241 71.0
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.7e-91 340.1 249 69.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.7e-91 340.1 252 70.6
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.9e-91 339.3 279 62.4
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 2.9e-91 339.3 321 57.3
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 3.7e-91 339.0 245 69.4
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.7e-91 339.0 242 71.1
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 8.3e-91 337.8 242 71.9
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 8.3e-91 337.8 312 59.0
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.1e-90 337.4 279 62.0
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.1e-90 337.4 247 68.4
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.9e-90 336.7 243 70.8
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.9e-90 336.7 259 67.2
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.9e-90 336.7 308 59.1
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 5.4e-90 335.1 287 60.6
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.2e-89 334.0 249 68.7
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.7e-89 332.8 242 69.0
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 3.5e-89 332.4 247 68.4
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 3.5e-89 332.4 242 67.4
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 4.6e-89 332.0 247 67.6
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 6.0e-89 331.6 278 62.6
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 7.8e-89 331.3 194 80.9
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 5.1e-88 328.6 327 54.7
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 6.6e-88 328.2 319 55.2
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.5e-87 327.0 307 56.0
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.9e-87 326.6 244 67.6
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.5e-87 326.2 271 61.6
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.5e-87 326.2 242 68.2
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 4.3e-87 325.5 269 62.1
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 7.3e-87 324.7 248 65.7
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 9.5e-87 324.3 311 57.6
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.6e-86 323.6 406 50.5
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.8e-86 322.8 313 59.7
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-85 320.9 331 57.1
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.1e-85 320.9 249 65.5
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.4e-85 320.5 242 66.1
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.4e-85 320.5 252 63.1
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.5e-84 317.0 226 70.4
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 2.0e-84 316.6 246 66.3
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 2.6e-84 316.2 243 63.8
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 7.6e-84 314.7 241 63.9
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.3e-83 313.9 252 61.5
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 2.2e-83 313.2 271 60.9
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 3.8e-83 312.4 243 63.4
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 8.4e-83 311.2 194 73.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.1e-82 310.8 245 67.3
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 4.6e-81 305.4 275 63.3
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 6.0e-81 305.1 179 83.2
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.3e-80 303.9 194 77.3
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 2.8e-78 296.2 303 58.7
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 6.9e-77 291.6 246 64.2
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 9.0e-77 291.2 174 82.8
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 5.8e-76 288.5 243 61.7
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-74 283.9 246 62.2
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 5.4e-74 282.0 238 62.2
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.1e-71 274.2 248 61.3
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.3e-70 270.8 240 56.7
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 2.0e-68 263.5 176 72.7
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.3e-67 260.8 276 50.7
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.1e-66 257.7 277 49.5
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 3.2e-66 256.1 164 73.8
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 5.4e-66 255.4 194 62.9
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.8e-64 250.4 159 75.5
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 3.7e-62 242.7 194 65.5
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 6.2e-62 241.9 141 84.4
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.9e-60 234.6 187 65.8
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.7e-57 226.5 137 82.5
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.0e-56 224.6 213 57.7
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.3e-56 223.4 137 78.1
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.5e-55 220.7 243 47.7
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.6e-52 209.9 130 76.2
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 3.8e-51 206.1 199 52.8
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 8.4e-51 204.9 188 61.2
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 9.3e-50 201.4 126 81.0
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.7e-49 199.9 195 50.3
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.3e-47 192.6 109 82.6
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 6.3e-46 188.7 115 82.6
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.4e-45 187.6 218 53.2
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.4e-45 186.8 111 76.6
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.2e-44 184.5 136 67.6
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.2e-44 184.5 136 67.6
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.2e-44 184.5 183 48.1
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 7.2e-42 175.3 97 86.6
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 3.9e-40 169.5 164 56.1
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 2.4e-37 160.2 197 43.7
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.5e-36 157.5 76 98.7
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.6e-33 147.5 179 43.6
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 6.1e-33 145.6 76 90.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.0e-32 143.3 221 37.1
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 7.0e-29 132.1 69 87.0
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 9.1e-29 131.7 191 42.4
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.9e-27 126.7 122 56.6
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.1e-26 124.8 213 34.7
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 2.7e-25 120.2 80 75.0
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.8e-24 117.5 211 35.5
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.7e-23 112.5 59 88.1
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.7e-22 109.8 100 58.0
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.0e-19 101.7 101 52.5
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 5.5e-18 95.9 63 71.4
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 5.5e-18 95.9 67 67.2
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.7e-17 93.6 52 80.8
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 3.7e-14 83.2 99 44.4
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.1e-13 80.1 59 55.9
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 1.9e-10 70.9 45 64.4
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.2e-09 68.2 102 37.3
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 3.6e-09 66.6 75 49.3
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 8.8e-08 62.0 45 60.0
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 2.8e-06 57.0 111 31.5
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 8.3e-06 55.5 148 28.4


User provided reference genes

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