Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 2.2e-46 188.7 102 100.0
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.5e-26 122.1 107 66.4
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 4.7e-25 117.9 104 65.4
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 1.4e-24 116.3 102 65.7
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 4.9e-22 107.8 105 62.9
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 4.9e-22 107.8 102 60.8
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 7.0e-21 104.0 102 58.8
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.3e-19 99.0 104 59.6
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 3.8e-19 98.2 103 56.3
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.1e-18 96.7 104 58.7
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.1e-18 96.7 104 58.7
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 7.3e-18 94.0 103 55.3
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 3.6e-17 91.7 103 54.4
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 6.1e-17 90.9 105 55.2
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 6.1e-17 90.9 103 54.4
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.4e-16 89.7 103 54.4
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.8e-16 89.4 103 54.4
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.3e-16 89.0 103 54.4
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.3e-16 89.0 105 55.2
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.2e-15 86.7 103 51.5
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.0e-15 85.9 103 52.4
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 2.6e-15 85.5 103 56.3
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 3.4e-15 85.1 103 53.4
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.4e-15 84.7 105 53.3
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 4.4e-15 84.7 102 51.0
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.8e-15 84.3 102 49.0
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.5e-15 84.0 103 51.5
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 7.5e-15 84.0 96 52.1
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.5e-15 84.0 102 49.0
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 9.8e-15 83.6 92 54.3
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 9.8e-15 83.6 102 50.0
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 1.3e-14 83.2 99 51.5
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 2.9e-14 82.0 104 52.9
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 2.9e-14 82.0 104 52.9
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 4.9e-14 81.3 102 49.0
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 4.9e-14 81.3 99 48.5
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 6.4e-14 80.9 68 63.2
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 6.4e-14 80.9 102 53.9
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 6.4e-14 80.9 101 47.5
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.1e-13 80.1 103 50.5
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.4e-13 79.7 101 50.5
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.4e-13 79.0 102 46.1
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 3.2e-13 78.6 105 54.3
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 3.2e-13 78.6 104 49.0
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 5.4e-13 77.8 102 46.1
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.4e-13 77.8 102 49.0
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 5.4e-13 77.8 93 49.5
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.0e-13 77.4 99 47.5
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 1.6e-12 76.3 102 46.1
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 1.6e-12 76.3 106 50.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 2.0e-12 75.9 102 46.1
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 2.0e-12 75.9 103 50.5
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 2.0e-12 75.9 103 46.6
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.7e-12 75.5 103 45.6
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 2.7e-12 75.5 104 46.2
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 6.0e-12 74.3 98 48.0
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 6.0e-12 74.3 103 48.5
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 6.0e-12 74.3 103 47.6
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 6.0e-12 74.3 103 46.6
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.0e-11 73.6 96 47.9
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 1.0e-11 73.6 105 47.6
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 1.3e-11 73.2 94 46.8
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 1.3e-11 73.2 102 45.1
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.7e-11 72.8 103 45.6
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 2.3e-11 72.4 103 45.6
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 3.0e-11 72.0 90 50.0
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 3.0e-11 72.0 106 47.2
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 3.9e-11 71.6 103 48.5
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 8.6e-11 70.5 103 45.6
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-10 70.1 101 41.6
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 1.1e-10 70.1 101 41.6
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 1.1e-10 70.1 100 43.0
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 1.9e-10 69.3 103 43.7
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.9e-10 69.3 103 45.6
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.5e-10 68.9 53 64.2
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 2.5e-10 68.9 103 41.7
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 3.3e-10 68.6 104 39.4
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 3.3e-10 68.6 103 41.7
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 3.3e-10 68.6 107 45.8
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 4.3e-10 68.2 103 42.7
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 4.3e-10 68.2 65 52.3
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 7.3e-10 67.4 83 53.0
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 9.5e-10 67.0 109 42.2
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 9.5e-10 67.0 94 43.6
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.2e-09 66.6 101 45.5
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 1.6e-09 66.2 101 40.6
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 1.6e-09 66.2 101 40.6
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 1.6e-09 66.2 101 40.6
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 2.8e-09 65.5 61 57.4
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 2.8e-09 65.5 103 40.8
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 2.8e-09 65.5 103 41.7
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 3.6e-09 65.1 93 45.2
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 3.6e-09 65.1 102 45.1
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 3.6e-09 65.1 75 52.0
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 4.7e-09 64.7 103 44.7
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 6.2e-09 64.3 102 45.1
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 8.0e-09 63.9 103 38.8
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 8.0e-09 63.9 109 40.4
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 8.0e-09 63.9 103 38.8
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 8.0e-09 63.9 103 38.8
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 8.0e-09 63.9 103 38.8
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 8.0e-09 63.9 109 40.4
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 8.0e-09 63.9 103 38.8
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 8.0e-09 63.9 102 40.2
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 1.1e-08 63.5 98 42.9
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.8e-08 62.8 103 48.5
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.3e-08 62.4 104 41.3
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.1e-08 62.0 104 43.3
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 3.1e-08 62.0 53 56.6
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 3.1e-08 62.0 102 40.2
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 3.1e-08 62.0 103 43.7
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 4.0e-08 61.6 103 42.7
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 4.0e-08 61.6 92 43.5
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 4.0e-08 61.6 104 37.5
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 6.8e-08 60.8 102 41.2
AUR62019592 Chenopodium quinoa HOM05D005059 ORTHO05D004248 8.9e-08 60.5 107 40.2
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 8.9e-08 60.5 102 45.1
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 1.2e-07 60.1 104 48.1
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.2e-07 60.1 92 40.2
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 1.5e-07 59.7 110 40.0
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-07 59.7 110 40.0
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 1.5e-07 59.7 110 40.0
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 1.5e-07 59.7 103 39.8
AUR62037560 Chenopodium quinoa HOM05D005059 ORTHO05D004248 2.6e-07 58.9 107 37.4
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 2.6e-07 58.9 104 41.3
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.6e-07 58.9 95 44.2
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 4.4e-07 58.2 101 43.6
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 4.4e-07 58.2 104 39.4
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 7.5e-07 57.4 102 42.2
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 7.5e-07 57.4 103 38.8
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 9.8e-07 57.0 101 43.6
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 9.8e-07 57.0 101 43.6
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 9.8e-07 57.0 101 37.6
Gohir.A01G049200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.3e-06 56.6 104 43.3
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 1.7e-06 56.2 101 42.6
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.7e-06 56.2 103 38.8
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 1.7e-06 56.2 103 38.8
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 2.2e-06 55.8 101 42.6
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.2e-06 55.8 101 38.6
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.9e-06 55.5 92 39.1
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 3.7e-06 55.1 101 35.6
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 3.7e-06 55.1 103 39.8
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 6.4e-06 54.3 106 38.7
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 6.4e-06 54.3 101 40.6
Gohir.D01G040200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.4e-06 54.3 102 42.2
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 8.3e-06 53.9 104 41.3
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 8.3e-06 53.9 104 41.3


User provided reference genes

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