Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.7e-158 562.8 312 100.0
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 4.8e-113 411.8 419 62.1
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 4.0e-91 339.0 272 68.0
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 5.5e-85 318.5 237 70.5
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 5.9e-79 298.5 245 66.1
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.7e-78 297.0 241 67.6
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 5.0e-78 295.4 248 64.5
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 6.6e-78 295.0 239 65.7
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.4e-75 287.3 237 64.6
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.4e-75 287.3 237 65.0
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.3e-75 286.6 237 64.6
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 6.8e-75 285.0 235 64.3
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 8.9e-75 284.6 236 65.3
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.6e-74 283.1 250 60.4
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 2.9e-73 279.6 249 61.4
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.9e-73 279.6 249 61.8
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 3.7e-73 279.3 392 49.0
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 3.7e-73 279.3 272 57.4
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 8.3e-73 278.1 207 68.6
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 4.1e-72 275.8 236 63.1
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 4.1e-72 275.8 240 62.1
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 5.4e-72 275.4 274 56.9
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 7.0e-72 275.0 235 63.8
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 1.2e-71 274.2 242 60.7
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 2.0e-71 273.5 276 57.2
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 2.7e-71 273.1 275 57.1
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 4.6e-71 272.3 251 59.8
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 7.8e-71 271.6 235 61.7
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.0e-70 271.2 252 63.1
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.7e-70 270.4 278 58.3
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 3.0e-70 269.6 261 59.0
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 5.0e-70 268.9 230 63.5
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 1.1e-69 267.7 239 63.2
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 1.5e-69 267.3 243 60.1
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.9e-69 266.9 238 62.2
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 3.3e-69 266.2 236 61.9
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 4.3e-69 265.8 327 54.1
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 4.3e-69 265.8 246 61.4
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 4.3e-69 265.8 246 60.6
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 4.3e-69 265.8 328 54.0
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 5.6e-69 265.4 228 62.7
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 5.6e-69 265.4 235 60.0
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 5.6e-69 265.4 272 54.8
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 9.5e-69 264.6 246 61.0
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.2e-68 264.2 258 57.0
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 4.7e-68 262.3 316 50.6
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 8.0e-68 261.5 273 52.7
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-67 260.8 233 63.5
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-67 260.8 241 62.7
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 1.4e-67 260.8 262 58.0
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 2.3e-67 260.0 230 63.5
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 3.1e-67 259.6 249 59.0
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.2e-66 257.7 258 55.8
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 2.0e-66 256.9 327 53.2
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 2.6e-66 256.5 253 58.5
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.4e-66 256.1 231 61.5
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 4.4e-66 255.8 235 57.9
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 9.8e-66 254.6 234 61.5
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.7e-65 253.8 297 52.5
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 2.2e-65 253.4 325 53.2
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.9e-65 253.1 246 57.7
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.1e-64 251.1 326 53.7
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.4e-64 250.8 248 59.3
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 1.9e-64 250.4 260 53.5
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.7e-63 246.5 224 59.8
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 6.0e-63 245.4 269 55.4
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 7.8e-63 245.0 295 51.2
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 1.0e-62 244.6 266 51.5
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 1.0e-62 244.6 188 67.6
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 3.0e-62 243.0 322 54.0
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 3.0e-62 243.0 242 57.4
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 3.9e-62 242.7 328 53.4
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 3.9e-62 242.7 324 49.7
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 5.0e-62 242.3 295 51.5
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 8.6e-62 241.5 230 56.1
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 8.6e-62 241.5 236 55.9
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.5e-61 240.7 240 57.1
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 1.9e-61 240.4 249 58.2
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 2.5e-61 240.0 249 58.2
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.5e-61 240.0 299 55.5
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 3.3e-61 239.6 321 50.8
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.3e-61 239.2 233 57.9
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 2.1e-60 236.9 322 53.4
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 6.2e-60 235.3 319 53.0
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 6.2e-60 235.3 319 53.0
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.1e-59 234.6 343 42.9
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 1.4e-59 234.2 200 66.0
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 1.8e-59 233.8 176 71.0
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.2e-58 231.1 236 53.0
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 1.5e-58 230.7 327 49.5
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.6e-58 229.9 358 48.3
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 1.3e-57 227.6 199 63.3
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.2e-57 226.9 285 49.8
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.9e-56 223.8 233 57.9
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 1.9e-56 223.8 381 45.7
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 3.2e-56 223.0 335 50.1
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.2e-56 223.0 191 63.9
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 4.1e-56 222.6 218 56.4
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 6.0e-55 218.8 260 48.8
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 7.8e-55 218.4 239 52.7
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 6.6e-54 215.3 245 53.1
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.1e-53 214.5 240 52.1
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.1e-53 214.5 240 52.1
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 2.5e-53 213.4 208 56.7
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 2.5e-53 213.4 255 45.9
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.3e-53 213.0 240 51.2
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 7.3e-53 211.8 243 50.6
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 1.2e-52 211.1 167 66.5
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 8.1e-52 208.4 240 52.1
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.4e-51 207.6 208 54.8
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 6.8e-51 205.3 240 51.7
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 3.4e-50 203.0 189 58.2
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.7e-47 193.4 197 53.8
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 1.1e-45 188.0 239 46.9
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.5e-45 187.6 213 50.2
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 2.1e-44 183.7 187 57.8
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.4e-43 181.0 306 47.1
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.7e-41 174.1 141 66.7
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 9.6e-37 158.3 233 43.3
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 4.5e-34 149.4 101 75.2
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 4.5e-34 149.4 302 37.7
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 7.6e-34 148.7 202 44.1
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 1.7e-33 147.5 119 64.7
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 8.4e-33 145.2 134 62.7
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 5.4e-32 142.5 110 64.5
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.2e-31 141.4 238 39.5
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 2.1e-31 140.6 118 67.8
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 7.9e-31 138.7 186 47.8
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.3e-30 137.1 207 45.9
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 2.3e-30 137.1 274 35.8
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 8.7e-30 135.2 153 45.8
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 4.8e-28 129.4 118 62.7
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 4.0e-27 126.3 150 50.7
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 6.9e-27 125.6 150 46.7
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 9.0e-27 125.2 71 77.5
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 9.0e-27 125.2 70 85.7
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.4e-26 123.2 71 76.1
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 8.4e-25 118.6 69 76.8
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.4e-24 117.1 198 40.9
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 4.2e-24 116.3 129 50.4
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.0e-22 111.7 247 35.6
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 1.3e-20 104.8 117 43.6
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 1.3e-20 104.8 338 31.4
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.1e-20 104.0 116 46.6
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 3.1e-19 100.1 118 48.3
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 9.0e-19 98.6 226 36.3
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 1.3e-12 78.2 67 62.7
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 6.3e-12 75.9 292 26.7
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.4e-11 74.7 95 48.4
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 2.0e-10 70.9 83 39.8


User provided reference genes

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