Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 7.5e-312 1072.8 551 100.0
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 9.6e-266 919.8 551 83.5
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 6.2e-265 917.1 552 83.2
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.1e-264 916.4 551 83.8
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.4e-264 916.0 555 84.1
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.9e-259 897.9 555 82.0
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 3.1e-256 888.3 551 80.6
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 4.9e-254 880.9 557 81.1
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.4e-253 879.4 552 81.0
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 2.5e-253 878.6 557 81.1
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.6e-249 865.9 558 79.2
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 6.5e-246 854.0 557 79.0
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.2e-244 849.7 558 77.2
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 6.1e-244 847.4 556 77.2
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 2.3e-243 845.5 556 78.6
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.6e-241 839.3 553 77.2
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 4.5e-239 831.2 551 79.1
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 3.9e-235 818.1 556 75.9
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 8.8e-235 817.0 552 76.4
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.9e-232 807.4 553 73.8
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.2e-231 806.6 554 75.5
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.6e-231 805.4 556 74.3
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 7.7e-231 803.9 552 73.6
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 7.7e-231 803.9 549 73.8
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-230 802.0 549 73.8
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.4e-229 799.7 557 73.6
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 5.5e-229 797.7 556 74.6
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 9.4e-229 797.0 556 73.6
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 3.6e-228 795.0 552 72.8
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.1e-226 790.0 561 72.4
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 9.7e-226 786.9 564 72.2
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.3e-225 786.6 556 73.4
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.7e-225 785.0 556 72.3
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 4.8e-225 784.6 553 73.8
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-224 782.3 558 71.9
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-224 782.3 558 71.9
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.6e-223 778.9 552 72.8
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.3e-222 776.5 563 72.8
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 2.2e-222 775.8 555 73.2
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 6.5e-222 774.2 563 72.3
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 8.5e-222 773.9 563 72.3
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 8.5e-222 773.9 563 72.3
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 5.5e-221 771.2 563 72.5
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 4.7e-220 768.1 563 73.0
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 1.0e-219 766.9 565 72.0
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.8e-219 766.1 560 70.7
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 2.3e-219 765.8 565 72.2
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.0e-219 765.4 564 71.1
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.0e-219 765.4 544 73.5
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.2e-218 763.5 563 71.0
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.5e-218 763.1 556 71.8
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.5e-218 763.1 564 71.3
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.0e-218 762.7 565 71.3
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.7e-218 761.1 490 78.0
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 3.7e-217 758.4 557 70.9
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 4.1e-216 755.0 551 74.0
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 5.3e-216 754.6 556 70.0
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.2e-215 753.4 551 69.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 5.9e-215 751.1 561 70.1
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 5.9e-215 751.1 568 68.5
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 7.7e-215 750.7 559 70.3
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.5e-213 746.5 562 69.6
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.1e-212 742.7 554 69.5
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 2.7e-212 742.3 509 77.2
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.6e-212 741.9 579 68.4
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 4.7e-212 741.5 564 69.3
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 4.7e-212 741.5 560 68.4
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.0e-211 740.3 560 70.5
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.8e-211 737.6 539 71.2
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 9.8e-210 733.8 563 69.4
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.3e-209 733.4 555 68.1
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 2.2e-209 732.6 551 69.5
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 6.3e-209 731.1 567 67.5
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 6.3e-209 731.1 559 70.7
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.1e-208 730.3 565 66.9
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.8e-208 729.6 551 69.9
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.1e-208 728.8 549 69.0
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 5.4e-208 728.0 553 69.3
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 3.5e-207 725.3 551 69.0
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 4.5e-207 724.9 551 68.6
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 7.7e-207 724.2 554 67.5
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 2.2e-206 722.6 551 68.4
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.6e-204 715.3 548 67.9
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.7e-201 706.4 563 65.7
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.8e-200 703.0 554 69.9
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.0e-198 697.2 556 65.1
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-198 696.8 566 66.1
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 6.6e-198 694.5 560 67.0
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 8.6e-198 694.1 547 65.8
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.5e-197 693.3 449 78.6
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.9e-197 693.0 556 65.1
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 2.5e-197 692.6 566 65.7
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 9.5e-197 690.6 549 64.8
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 4.7e-196 688.3 549 65.8
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 8.0e-196 687.6 464 73.1
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 6.8e-195 684.5 549 65.2
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 6.8e-195 684.5 553 64.4
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 5.7e-194 681.4 456 72.1
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.7e-193 679.9 556 63.8
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.1e-192 677.2 564 66.5
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-191 673.7 554 64.1
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 3.5e-191 672.2 526 68.8
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.3e-190 669.5 398 81.2
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.1e-189 667.2 551 63.0
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.9e-189 666.4 557 64.6
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.9e-189 666.4 569 63.3
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 4.7e-188 661.8 551 62.1
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 4.0e-187 658.7 548 63.0
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.0e-186 656.4 562 60.7
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.1e-184 650.6 556 63.7
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.9e-184 649.8 548 61.9
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.2e-179 631.7 558 61.3
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 4.6e-175 618.6 401 76.3
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 5.1e-174 615.1 553 61.7
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 4.0e-171 605.5 553 59.5
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 8.9e-171 604.4 542 63.5
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.5e-170 603.6 384 76.3
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-169 600.5 338 84.0
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.3e-169 600.5 580 55.7
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 4.1e-168 595.5 555 61.1
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 8.9e-163 577.8 543 59.3
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 9.0e-155 551.2 517 55.7
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 7.6e-154 548.1 551 54.3
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.1e-152 544.3 303 85.5
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 3.4e-146 522.7 472 62.9
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 5.5e-128 462.2 452 47.6
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 2.6e-122 443.4 317 77.3
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 3.3e-117 426.4 385 60.5
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.9e-104 384.0 505 47.9
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.2e-104 383.3 384 46.6
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 8.2e-100 368.6 197 87.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.9e-97 360.1 390 53.1
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.0e-97 359.4 289 65.4
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.6e-90 337.8 358 53.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.2e-86 322.8 210 71.4
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 4.1e-75 286.6 209 73.7
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.3e-72 276.6 155 84.5
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.4e-62 245.0 199 62.3
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 6.6e-57 226.1 271 52.4
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.9e-48 198.0 174 63.8
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.1e-46 192.2 274 44.2
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.7e-36 158.3 91 80.2
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-35 155.2 91 79.1
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 5.6e-32 143.3 471 26.5
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 6.0e-26 123.2 79 72.2
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.9e-24 118.2 69 79.7
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 3.3e-24 117.5 115 53.9
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 7.4e-24 116.3 69 78.3
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 4.8e-23 113.6 69 76.8
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.9e-22 109.8 152 45.4
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.1e-17 93.6 180 31.7
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 2.8e-15 87.8 73 57.5
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 3.7e-15 87.4 51 80.4
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.1e-14 85.9 129 43.4
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.5e-13 82.0 79 55.7
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.3e-08 64.3 50 60.0
Nitab4.5_0003733g0050 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.9e-06 56.6 43 65.1


User provided reference genes

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