Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 1.3e-244 849.4 435 100.0
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 4.8e-119 432.2 427 59.5
Potri.004G052900 Populus trichocarpa HOM05D058718 ORTHO05D010890 3.4e-56 223.4 431 41.5
Sabra04G0034300 Salix brachista HOM05D058718 ORTHO05D010890 2.8e-42 177.2 355 40.3
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 1.9e-38 164.5 462 36.4
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 4.9e-31 139.8 417 33.6
Gohir.D10G030600 Gossypium hirsutum HOM05D013066 ORTHO05D010890 4.2e-30 136.7 424 37.3
Gorai.011G032500 Gossypium raimondii HOM05D013066 ORTHO05D010890 6.6e-28 129.4 437 36.4
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 1.1e-27 128.6 464 31.5
Cfa000566 Carpinus fangiana HOM05D038757 ORTHO05D010890 1.9e-27 127.9 384 33.9
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 6.2e-26 122.9 412 32.8
Gohir.A05G157001 Gossypium hirsutum HOM05D013066 ORTHO05D010890 1.1e-25 122.1 445 33.0
Gohir.A10G030000 Gossypium hirsutum HOM05D013066 ORTHO05D010890 2.6e-24 117.5 440 34.5
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 2.6e-24 117.5 434 30.6
Gohir.D05G159900 Gossypium hirsutum HOM05D013066 ORTHO05D010890 3.4e-24 117.1 445 33.0
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 4.5e-24 116.7 441 31.7
CiPaw.09G066800 Carya illinoinensis HOM05D009670 ORTHO05D010890 9.9e-24 115.5 459 31.2
Gorai.009G164800 Gossypium raimondii HOM05D013066 ORTHO05D010890 9.9e-24 115.5 446 32.7
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 9.9e-24 115.5 410 31.2
Atru.chr10.1733 Acer truncatum HOM05D009670 ORTHO05D010890 1.3e-23 115.2 404 33.2
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 3.8e-23 113.6 408 31.6
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 6.4e-23 112.8 444 31.3
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.9e-22 111.3 402 31.8
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 5.5e-22 109.8 418 31.6
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 9.3e-22 109.0 447 30.9
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 1.2e-21 108.6 419 32.7
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.6e-21 108.2 445 31.5
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 2.1e-21 107.8 418 32.5
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 2.7e-21 107.5 412 31.6
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 3.5e-21 107.1 449 30.7
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.6e-21 106.7 448 30.6
TWI63G1542 Tripterygium wilfordii HOM05D013066 ORTHO05D010890 6.0e-21 106.3 233 37.3
Cpa.g.sc7.22 Carica papaya HOM05D013066 ORTHO05D010890 7.9e-21 105.9 426 33.8
Medtr2g015330 Medicago truncatula HOM05D009670 ORTHO05D010890 7.9e-21 105.9 402 32.1
Lj6g0011843 Lotus japonicus HOM05D009670 ORTHO05D010890 2.3e-20 104.4 397 33.0
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 2.3e-20 104.4 424 30.9
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 2.3e-20 104.4 417 30.5
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 8.7e-20 102.4 425 31.5
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 8.7e-20 102.4 421 29.9
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.5e-19 101.7 293 32.8
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.9e-19 101.3 448 29.9
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.3e-19 100.5 452 30.5
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 5.6e-19 99.8 395 31.6
Ca_00413_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 7.4e-19 99.4 468 32.5
Ca_30157_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 7.4e-19 99.4 468 32.5
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 2.1e-18 97.8 442 30.3
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 2.1e-18 97.8 329 30.7
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 3.7e-18 97.1 424 31.6
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 1.4e-17 95.1 448 29.2
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.8e-17 94.7 338 31.4
Glyma.15G079800 Glycine max HOM05D009670 ORTHO05D010890 3.1e-17 94.0 459 29.8
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 3.1e-17 94.0 351 34.5
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 6.9e-17 92.8 404 30.4
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 2.0e-16 91.3 368 29.3
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 2.0e-16 91.3 414 28.7
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.6e-16 90.9 406 30.8
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 2.6e-16 90.9 434 29.3
Phvul.006G178900 Phaseolus vulgaris HOM05D009670 ORTHO05D010890 2.6e-16 90.9 449 31.4
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 3.4e-16 90.5 429 28.4
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 5.8e-16 89.7 417 29.5
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 1.0e-15 89.0 442 28.3
COL.COLO4_31355 Corchorus olitorius HOM05D013066 ORTHO05D010890 1.3e-15 88.6 240 35.8
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 1.3e-15 88.6 408 29.9
VMungo0540G1521 Vigna mungo HOM05D009670 ORTHO05D010890 3.8e-15 87.0 448 30.4
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 8.4e-15 85.9 413 28.3
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 8.4e-15 85.9 439 30.1
Lj1g0012311 Lotus japonicus HOM05D009670 ORTHO05D010890 1.4e-14 85.1 436 29.6
Lalb_Chr18g0059231 Lupinus albus HOM05D009670 ORTHO05D010890 1.4e-14 85.1 298 29.9
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 3.2e-14 84.0 418 28.0
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 3.2e-14 84.0 405 29.9
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 3.2e-14 84.0 439 29.4
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 9.3e-14 82.4 410 28.5
arahy.Tifrunner.gnm1.ann1.33PIHY Arachis hypogaea HOM05D009670 ORTHO05D010890 1.6e-13 81.6 469 29.9
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 1.6e-13 81.6 370 30.3
arahy.Tifrunner.gnm1.ann1.81KKWU Arachis hypogaea HOM05D009670 ORTHO05D010890 7.9e-13 79.3 464 29.7
Psat1g200600 Pisum sativum HOM05D009670 ORTHO05D010890 7.9e-13 79.3 423 27.9
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.0e-12 79.0 227 35.2
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.0e-12 79.0 409 30.6
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 1.3e-12 78.6 422 28.7
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 3.0e-12 77.4 432 27.1
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 3.9e-12 77.0 335 29.3
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 6.7e-12 76.3 296 31.1
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 8.7e-12 75.9 355 29.9
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 8.7e-12 75.9 405 29.4
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 1.1e-11 75.5 414 28.0
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.1e-11 75.5 409 29.8
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 1.9e-11 74.7 269 32.0
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 5.7e-11 73.2 327 30.0
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 5.7e-11 73.2 417 28.5
Cfa000563 Carpinus fangiana HOM05D038757 ORTHO05D010890 9.6e-11 72.4 210 34.3
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.3e-10 72.0 423 28.8
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 1.3e-10 72.0 434 27.2
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.6e-10 71.6 409 29.1
Lalb_Chr20g0121361 Lupinus albus HOM05D009670 ORTHO05D010890 1.6e-10 71.6 281 34.9
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 2.1e-10 71.2 422 27.5
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 2.1e-10 71.2 321 29.9
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.1e-10 71.2 219 32.4
CANSAT35G1313 Cannabis sativa HOM05D009670 ORTHO05D010890 2.8e-10 70.9 468 30.3
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 3.7e-10 70.5 298 31.2
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 3.7e-10 70.5 401 28.9
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 6.3e-10 69.7 402 28.1
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 8.2e-10 69.3 409 27.9
Lalb_Chr15g0089411 Lupinus albus HOM05D009670 ORTHO05D010890 1.1e-09 68.9 261 31.4
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 1.4e-09 68.6 447 27.7
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.4e-09 68.6 235 31.1
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.8e-09 68.2 324 30.6
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 1.8e-09 68.2 407 25.6
Medtr4g048110 Medicago truncatula HOM05D009670 ORTHO05D010890 3.1e-09 67.4 401 27.7
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 3.1e-09 67.4 232 31.9
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.1e-09 67.0 332 29.8
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 5.3e-09 66.6 406 28.8
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 5.3e-09 66.6 217 32.7
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 5.3e-09 66.6 400 28.0
THA.LOC104814244 Tarenaya hassleriana HOM05D009294 ORTHO05D011427 9.0e-09 65.9 442 29.0
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.2e-08 65.5 423 27.7
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.2e-08 65.5 431 27.6
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 1.5e-08 65.1 404 25.0
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 3.4e-08 63.9 432 28.9
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 5.9e-08 63.2 357 29.1
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.3e-07 62.0 278 30.2
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.3e-07 62.0 241 32.8
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 3.8e-07 60.5 414 26.8
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 3.8e-07 60.5 410 27.6
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 5.0e-07 60.1 407 27.5
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 6.5e-07 59.7 416 24.8
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 8.4e-07 59.3 344 26.5
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 1.1e-06 58.9 425 27.8
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 1.9e-06 58.2 393 27.7
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 2.5e-06 57.8 419 28.9
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.2e-06 57.0 247 29.6
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 4.2e-06 57.0 353 26.6
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 4.2e-06 57.0 407 29.0
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 5.5e-06 56.6 392 26.5


User provided reference genes

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