Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 8.3e-90 333.6 155 100.0
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 4.7e-77 291.2 155 87.1
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 9.8e-75 283.5 155 84.5
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 5.0e-71 271.2 155 80.6
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 7.3e-70 267.3 156 78.8
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 1.2e-69 266.5 152 80.3
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 2.1e-69 265.8 149 80.5
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 3.6e-69 265.0 154 78.6
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 3.1e-68 261.9 150 78.0
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 5.2e-68 261.2 149 79.9
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 5.2e-68 261.2 149 76.5
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 5.2e-68 261.2 156 78.8
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 2.9e-66 255.4 149 77.2
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.9e-65 252.7 156 75.0
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 3.2e-65 251.9 156 75.6
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 2.1e-64 249.2 156 74.4
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 6.0e-64 247.7 153 73.9
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 7.8e-64 247.3 151 72.8
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 3.0e-63 245.4 156 73.7
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 3.9e-63 245.0 151 76.2
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 4.3e-62 241.5 155 72.3
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 9.5e-62 240.4 149 72.5
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 3.6e-61 238.4 150 74.7
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 1.4e-60 236.5 147 72.1
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 3.1e-60 235.3 151 68.2
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 4.0e-60 235.0 153 69.3
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 5.2e-60 234.6 151 70.2
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 5.2e-60 234.6 151 70.2
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 5.2e-60 234.6 155 69.0
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 6.8e-60 234.2 150 72.7
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 1.5e-59 233.0 148 72.3
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 2.0e-59 232.6 148 72.3
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 3.4e-59 231.9 153 68.6
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 3.4e-59 231.9 150 66.7
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 1.7e-58 229.6 149 71.1
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 6.4e-58 227.6 149 70.5
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 6.4e-58 227.6 154 68.2
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.1e-57 226.9 149 69.8
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.4e-57 226.5 149 69.8
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 1.2e-56 223.4 156 68.6
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 2.1e-56 222.6 152 67.1
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 2.7e-56 222.2 153 68.6
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 7.8e-56 220.7 153 65.4
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 1.0e-55 220.3 155 66.5
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 5.1e-55 218.0 153 62.7
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 1.5e-54 216.5 151 63.6
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 9.5e-54 213.8 152 67.8
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 8.1e-53 210.7 156 62.2
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 8.1e-53 210.7 148 64.9
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 8.1e-53 210.7 148 64.9
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 2.4e-52 209.1 152 67.8
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 2.4e-52 209.1 150 66.7
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 5.2e-52 208.0 117 81.2
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 4.4e-51 204.9 150 60.7
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 4.4e-51 204.9 153 62.7
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 7.6e-51 204.1 151 62.9
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 7.6e-51 204.1 151 62.9
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 7.6e-51 204.1 151 63.6
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 7.6e-51 204.1 149 61.7
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 2.9e-50 202.2 151 62.3
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 2.9e-50 202.2 151 62.3
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 8.4e-50 200.7 150 64.0
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 8.4e-50 200.7 153 60.1
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 1.1e-49 200.3 150 61.3
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 1.4e-49 199.9 149 60.4
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 5.4e-49 198.0 151 60.3
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 5.4e-49 198.0 148 57.4
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 1.2e-48 196.8 152 62.5
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.2e-48 196.8 112 79.5
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 4.6e-48 194.9 128 71.9
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 5.1e-47 191.4 151 59.6
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 2.5e-46 189.1 151 59.6
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 4.3e-46 188.3 151 59.6
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 1.6e-45 186.4 149 57.0
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 1.4e-44 183.3 150 58.0
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 4.2e-41 171.8 119 67.2
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.0e-39 167.2 125 64.0
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 3.9e-39 165.2 155 52.3
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 3.5e-32 142.1 104 69.2
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 1.3e-29 133.7 143 42.7
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 6.9e-28 127.9 98 68.4
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 1.1e-20 104.0 154 38.3
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 3.1e-20 102.4 149 38.3
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 4.2e-17 92.0 56 76.8
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 1.2e-16 90.5 62 59.7
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 2.8e-13 79.3 56 58.9
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 4.3e-06 55.5 84 33.3


User provided reference genes

Program Settings