Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 4.2e-203 711.1 338 100.0
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 1.5e-184 649.4 328 92.7
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 2.2e-172 609.0 338 85.5
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 5.0e-172 607.8 332 87.3
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 8.4e-172 607.1 332 86.7
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.1e-171 606.7 318 89.3
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 1.4e-171 606.3 324 88.0
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 5.5e-171 604.4 339 84.7
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 7.2e-171 604.0 336 85.1
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 1.2e-170 603.2 331 86.7
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 1.6e-170 602.8 330 86.4
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 4.6e-170 601.3 338 84.9
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 7.9e-170 600.5 330 86.4
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.3e-169 599.0 334 85.3
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 8.7e-169 597.0 327 86.2
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 1.1e-168 596.7 329 84.8
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.5e-168 596.3 339 84.1
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.9e-168 595.9 320 86.6
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 1.9e-168 595.9 339 84.1
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.3e-168 595.1 324 87.3
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 4.3e-168 594.7 339 84.1
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 7.4e-168 594.0 339 84.1
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 9.7e-168 593.6 330 84.8
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 9.7e-168 593.6 330 84.8
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 9.7e-168 593.6 330 84.8
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.7e-168 593.6 326 85.3
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.3e-167 593.2 324 87.3
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 2.2e-167 592.4 330 84.8
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 2.8e-167 592.0 324 86.7
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.8e-167 592.0 340 83.5
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 3.7e-167 591.7 316 88.3
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.7e-167 591.7 330 84.5
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 3.7e-167 591.7 338 83.7
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 3.7e-167 591.7 330 85.2
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 6.3e-167 590.9 323 84.5
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.8e-166 589.3 338 83.4
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.1e-166 588.6 336 83.3
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 9.0e-166 587.0 333 82.6
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 9.0e-166 587.0 333 82.6
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 1.5e-165 586.3 313 85.3
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.0e-165 585.9 331 82.8
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 2.6e-165 585.5 313 86.6
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 2.6e-165 585.5 313 86.3
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.6e-165 585.5 331 82.8
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 5.9e-165 584.3 326 84.7
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 5.9e-165 584.3 338 82.8
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 7.7e-165 583.9 322 84.5
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 1.0e-164 583.6 324 84.3
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 1.0e-164 583.6 321 85.0
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 1.3e-164 583.2 326 83.4
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 1.7e-164 582.8 313 85.6
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 2.2e-164 582.4 321 85.7
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 5.0e-164 581.3 334 80.8
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 5.0e-164 581.3 321 86.3
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 5.0e-164 581.3 322 84.5
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 6.5e-164 580.9 336 79.5
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 6.5e-164 580.9 338 82.5
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.1e-163 580.1 317 85.2
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.1e-163 580.1 326 83.1
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.9e-163 579.3 314 84.7
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 2.5e-163 578.9 318 84.9
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 4.2e-163 578.2 325 83.4
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 1.6e-162 576.2 338 80.5
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.6e-162 576.2 318 83.6
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.6e-162 576.2 324 82.7
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 2.7e-162 575.5 307 88.3
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 3.6e-162 575.1 328 81.4
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 4.6e-162 574.7 337 80.4
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 6.1e-162 574.3 337 80.4
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 6.1e-162 574.3 337 80.4
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 7.9e-162 573.9 327 81.7
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 2.3e-161 572.4 335 79.7
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 5.1e-161 571.2 310 84.8
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 6.7e-161 570.9 320 80.3
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 6.7e-161 570.9 320 80.3
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 8.8e-161 570.5 314 82.5
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 2.0e-160 569.3 330 81.2
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 5.7e-160 567.8 324 82.4
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 5.7e-160 567.8 326 80.4
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 1.3e-159 566.6 337 79.2
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 1.3e-159 566.6 337 79.2
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 1.3e-159 566.6 329 82.1
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.3e-159 566.6 324 82.1
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 1.3e-159 566.6 326 82.2
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 2.2e-159 565.8 382 73.6
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 2.8e-159 565.5 331 81.9
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 3.7e-159 565.1 310 85.2
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 1.1e-158 563.5 327 82.3
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 1.8e-158 562.8 323 80.5
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 9.1e-158 560.5 337 78.9
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 1.5e-157 559.7 318 82.4
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 2.0e-157 559.3 324 81.8
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 7.7e-157 557.4 334 78.4
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 2.2e-156 555.8 334 78.1
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 2.2e-156 555.8 331 80.4
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 4.2e-155 551.6 324 79.9
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 5.5e-155 551.2 332 78.0
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 7.2e-155 550.8 357 74.2
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 7.2e-155 550.8 314 79.3
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 9.4e-155 550.4 332 78.3
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 1.6e-154 549.7 319 80.6
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 4.7e-154 548.1 324 78.4
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 6.7e-153 544.3 333 77.2
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 1.8e-150 536.2 319 78.4
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 5.5e-147 524.6 306 80.1
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.1e-142 510.4 311 74.9
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.4e-142 509.2 312 77.6
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 1.2e-141 506.9 315 74.0
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 4.5e-141 505.0 338 71.0
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 7.7e-141 504.2 274 86.1
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.0e-140 503.8 308 74.4
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.7e-140 503.1 277 83.8
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 3.0e-137 492.3 279 83.2
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 6.5e-132 474.6 310 70.0
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 9.5e-131 470.7 333 68.8
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 7.5e-128 461.1 308 66.9
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.7e-127 459.9 346 62.7
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.7e-127 459.9 346 62.7
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 6.3e-127 458.0 305 69.5
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 5.4e-126 454.9 251 82.5
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 5.6e-115 418.3 307 62.2
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 4.0e-113 412.1 228 84.6
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 4.6e-101 372.1 319 57.1
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 3.0e-100 369.4 249 68.3
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 1.4e-94 350.5 215 76.3
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 2.5e-91 339.7 315 52.1
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 1.9e-83 313.5 354 44.4
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 4.0e-73 279.3 360 41.1
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 7.6e-56 221.9 123 78.9
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.0e-31 141.7 82 81.7
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 2.7e-29 133.7 89 75.3
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.0e-20 105.1 84 65.5
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 9.8e-19 98.6 68 70.6
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 6.5e-15 85.9 52 76.9
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 3.6e-13 80.1 47 76.6
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 3.0e-12 77.0 50 70.0
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 4.0e-12 76.6 41 82.9
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 8.6e-07 58.9 42 61.9


User provided reference genes

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