Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 0.0e+00 1427.9 745 100.0
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 6.9e-267 924.1 753 67.9
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 2.4e-264 915.6 756 67.9
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.2e-239 833.6 750 61.3
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 3.7e-228 795.4 748 59.8
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 7.0e-219 764.6 747 57.4
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 7.5e-213 744.6 746 57.4
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 1.7e-209 733.4 747 56.5
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 9.5e-208 727.6 748 54.5
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.7e-207 725.3 745 54.8
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 1.4e-206 723.8 751 55.5
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 4.4e-205 718.8 738 54.9
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 1.6e-202 710.3 737 54.5
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 1.7e-201 706.8 748 54.1
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.3e-201 706.4 755 53.8
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 2.5e-200 703.0 759 54.2
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.6e-199 700.3 755 53.9
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 2.1e-199 699.9 751 53.8
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.1e-199 699.9 755 53.9
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 3.6e-199 699.1 756 53.2
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 2.3e-198 696.4 747 53.7
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 3.0e-198 696.0 756 53.6
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 3.5e-194 682.6 656 57.8
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 6.4e-188 661.8 747 52.1
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.1e-187 661.0 749 51.8
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 2.0e-186 656.8 715 52.6
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 2.0e-186 656.8 747 51.7
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 3.5e-186 656.0 745 51.7
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 7.8e-186 654.8 749 50.7
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 6.6e-185 651.7 745 51.8
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 1.9e-184 650.2 745 51.7
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 2.6e-181 639.8 760 50.9
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 2.9e-180 636.3 756 50.0
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.9e-179 633.6 749 49.8
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 8.6e-177 624.8 758 51.5
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.5e-176 624.0 755 49.4
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.9e-176 623.6 694 51.7
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 2.5e-176 623.2 755 48.9
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 2.6e-173 613.2 724 49.7
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 8.4e-172 608.2 755 49.1
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.1e-171 607.8 758 49.7
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 1.5e-168 597.4 742 50.1
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 8.1e-167 591.7 784 48.1
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 2.2e-164 583.6 752 47.2
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 8.7e-161 571.6 694 49.4
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.9e-160 570.5 741 47.2
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 2.8e-159 566.6 753 46.2
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 4.8e-159 565.8 739 46.5
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 6.2e-159 565.5 747 45.9
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 4.9e-156 555.8 700 47.6
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 1.9e-155 553.9 756 46.6
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 7.1e-155 552.0 778 45.9
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 7.1e-155 552.0 778 45.9
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 5.1e-153 545.8 735 45.7
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 1.1e-152 544.7 741 45.2
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 4.3e-152 542.7 767 44.6
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.3e-151 541.2 750 45.5
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 2.8e-151 540.0 751 45.9
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 6.2e-151 538.9 744 44.8
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 3.8e-148 529.6 738 44.7
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 8.4e-148 528.5 753 44.6
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 3.4e-141 506.5 730 42.9
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 1.3e-140 504.6 703 43.5
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.7e-140 504.2 682 46.0
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 2.5e-139 500.4 753 44.1
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.8e-137 494.2 547 53.4
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 1.3e-135 488.0 756 42.1
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.8e-134 484.2 711 44.3
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 2.6e-133 480.3 690 43.5
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 4.5e-133 479.6 845 41.2
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 7.9e-130 468.8 728 42.7
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 8.8e-129 465.3 750 43.3
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 8.2e-127 458.8 583 47.3
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.4e-121 441.4 732 41.4
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 5.0e-116 422.9 302 73.8
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 1.6e-114 417.9 750 41.7
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.2e-104 385.2 330 61.8
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 9.7e-104 382.1 768 37.2
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 1.4e-102 378.3 484 49.8
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.8e-89 334.7 620 38.5
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 3.0e-89 334.0 379 52.8
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 3.7e-87 327.0 258 63.6
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 1.4e-86 325.1 240 70.4
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 3.8e-84 317.0 323 52.9
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 2.2e-79 301.2 262 59.5
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 1.1e-57 229.2 265 49.8
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 8.4e-55 219.5 334 43.1
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 4.3e-51 207.2 450 35.3
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 1.8e-49 201.8 158 67.1
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.6e-48 198.0 157 65.0
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 6.7e-36 156.8 202 44.1
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 1.6e-29 135.6 98 68.4
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 1.5e-24 119.0 186 38.7
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 6.7e-20 103.6 161 41.6
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 2.5e-19 101.7 80 63.8
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 2.6e-16 91.7 110 45.5
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 1.3e-15 89.4 84 50.0
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 1.1e-11 76.3 257 27.2
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 4.2e-06 57.8 95 40.0


User provided reference genes

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