Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 0.0e+00 1735.3 901 100.0
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 0.0e+00 1347.0 906 79.6
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 0.0e+00 1136.7 910 69.0
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 0.0e+00 1093.6 918 66.6
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 0.0e+00 1085.5 926 65.9
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 3.0e-301 1038.5 909 64.2
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 5.5e-295 1017.7 901 63.9
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 8.0e-294 1013.8 923 64.5
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.0e-285 986.9 949 61.4
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 6.8e-285 984.2 920 62.1
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.8e-283 978.8 905 62.1
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 4.1e-282 974.9 906 62.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 5.9e-281 971.1 918 62.1
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.4e-274 949.1 927 60.5
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.2e-274 947.2 919 60.0
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 8.0e-270 934.1 791 66.1
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 7.5e-268 927.5 972 57.0
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.5e-268 927.5 918 59.7
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 6.0e-265 917.9 912 59.8
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.3e-264 916.8 913 61.0
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.9e-263 912.9 914 58.9
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.2e-262 910.2 896 59.5
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 1.5e-260 903.3 923 57.2
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 2.1e-254 882.9 914 58.2
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 4.7e-254 881.7 1028 54.2
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 6.2e-254 881.3 943 57.3
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 1.8e-253 879.8 909 57.9
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 5.8e-252 874.8 950 56.9
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.9e-251 872.5 918 57.0
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 6.4e-251 871.3 899 57.1
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.4e-250 870.2 913 56.5
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 7.1e-250 867.8 946 56.2
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 1.6e-249 866.7 914 57.8
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 3.5e-249 865.5 934 55.9
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 3.0e-248 862.4 949 56.1
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 3.0e-248 862.4 975 53.5
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.3e-247 857.8 924 56.6
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 7.3e-247 857.8 1003 53.3
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 8.1e-246 854.4 737 64.0
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 3.1e-245 852.4 931 56.6
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 4.0e-245 852.0 981 53.7
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.0e-245 852.0 981 53.8
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 5.3e-245 851.7 959 54.4
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.9e-245 851.3 982 53.5
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.5e-244 850.1 924 56.2
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 2.0e-244 849.7 823 58.3
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.8e-244 848.2 988 53.7
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.6e-244 847.8 924 56.1
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.9e-243 845.9 948 53.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.9e-243 845.9 808 60.3
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 6.4e-243 844.7 918 55.9
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.4e-243 844.7 982 53.6
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 2.4e-242 842.8 918 55.9
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 9.3e-242 840.9 954 53.6
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 1.6e-241 840.1 853 58.0
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 2.1e-241 839.7 795 61.0
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 2.1e-238 829.7 925 53.7
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.8e-238 829.3 922 55.0
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 4.8e-238 828.6 908 55.0
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 2.6e-236 822.8 913 55.1
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.7e-235 820.1 1110 48.8
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 2.2e-235 819.7 952 53.0
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 6.4e-235 818.1 972 52.7
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 7.4e-231 804.7 920 54.8
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 7.4e-231 804.7 1000 51.6
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 3.4e-228 795.8 1003 51.2
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 3.8e-227 792.3 913 55.1
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.1e-226 790.8 979 51.1
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.1e-225 786.6 956 52.4
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 3.5e-225 785.8 928 53.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 8.7e-224 781.2 1019 50.6
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 3.7e-222 775.8 985 51.1
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 9.0e-221 771.2 907 51.8
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 4.6e-217 758.8 916 53.1
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 2.3e-216 756.5 920 50.7
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.9e-215 753.4 917 51.1
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 4.8e-214 748.8 797 54.7
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 6.9e-213 745.0 931 49.6
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.5e-212 743.8 957 49.7
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 3.4e-212 742.7 913 51.9
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 5.9e-212 741.9 1022 47.3
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.5e-210 736.5 907 50.7
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 4.6e-209 732.3 908 50.8
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 4.6e-209 732.3 904 51.4
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 7.9e-209 731.5 908 50.8
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.0e-208 731.1 1022 47.5
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 3.0e-208 729.6 905 50.4
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 3.0e-208 729.6 905 50.4
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 5.1e-208 728.8 877 51.2
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 2.0e-207 726.9 911 50.7
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 3.3e-207 726.1 901 49.9
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 4.3e-207 725.7 911 50.7
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 9.7e-207 724.5 940 49.9
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.3e-206 724.2 907 49.9
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 1.4e-205 720.7 1018 46.6
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 4.1e-205 719.2 813 53.8
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 3.4e-204 716.1 937 49.6
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 5.9e-204 715.3 910 50.0
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 3.8e-203 712.6 924 49.6
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 4.2e-202 709.1 976 47.5
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 7.2e-202 708.4 906 49.8
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 7.9e-201 704.9 883 49.7
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-200 704.1 910 49.7
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.5e-199 700.7 974 47.4
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 4.4e-199 699.1 916 50.1
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 4.4e-199 699.1 792 52.5
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 4.8e-198 695.7 934 48.2
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 3.1e-197 693.0 907 49.2
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 4.1e-197 692.6 908 48.2
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 3.5e-196 689.5 898 49.2
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 4.5e-196 689.1 884 50.6
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.0e-195 688.0 920 49.6
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 6.5e-195 685.3 911 48.1
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.1e-194 684.5 859 49.6
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 7.2e-194 681.8 932 48.3
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 9.4e-194 681.4 1062 43.8
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 4.7e-193 679.1 800 51.6
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.4e-192 677.6 928 48.1
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 9.4e-186 654.8 934 46.8
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 6.3e-182 642.1 901 47.2
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.3e-182 642.1 876 46.0
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 8.3e-182 641.7 876 46.0
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 2.4e-181 640.2 956 45.1
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 5.2e-176 622.5 775 48.9
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.9e-162 577.4 943 43.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 2.0e-159 567.4 805 45.3
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 2.9e-158 563.5 819 44.2
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 3.2e-133 480.3 993 39.1
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 5.6e-130 469.5 879 39.1
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.3e-121 441.8 369 66.1
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.1e-116 424.5 538 48.9
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 4.6e-116 423.3 998 35.3
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.8e-112 411.4 964 34.3
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.8e-112 411.4 964 34.3
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 3.4e-111 407.1 669 42.3
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 4.3e-106 390.2 904 34.7
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 9.3e-101 372.5 346 61.3
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.7e-87 326.2 286 61.9
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.8e-83 315.1 364 52.2
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 9.7e-82 309.3 483 44.3
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.7e-81 308.5 387 51.2
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.3e-73 282.3 404 46.8
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 5.9e-71 273.5 251 62.2
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.0e-70 272.7 975 28.6
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.4e-56 225.7 139 82.0
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 2.7e-55 221.5 256 48.8
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 2.8e-52 211.5 488 36.5
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.2e-43 180.6 194 55.7
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.6e-39 167.5 175 57.1
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.3e-38 165.2 224 47.8
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 6.8e-35 153.7 192 46.4
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.9e-35 153.3 144 61.8
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 2.9e-33 148.3 205 49.8
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 3.2e-32 144.8 163 49.7
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-27 129.8 111 60.4
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 6.8e-27 127.1 88 71.6
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 4.6e-23 114.4 79 72.2
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 6.6e-22 110.5 112 53.6
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 5.6e-21 107.5 87 66.7
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 1.2e-20 106.3 57 94.7
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 4.7e-20 104.4 118 49.2
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 1.4e-19 102.8 84 60.7
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 1.4e-19 102.8 63 79.4
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 2.4e-19 102.1 73 68.5
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 8.9e-19 100.1 89 57.3
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 7.6e-18 97.1 115 51.3
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.2e-17 95.5 62 72.6
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 3.8e-17 94.7 89 55.1
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.4e-16 92.8 59 84.7
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 3.5e-15 88.2 92 48.9
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.0e-14 85.1 92 54.3
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.9e-13 82.4 69 63.8
SHI01815 Sapria himalayana HOM05D003782 ORTHO05D004361 2.8e-12 78.6 218 33.9
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 6.2e-12 77.4 126 41.3
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 6.9e-11 73.9 95 43.2
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 6.9e-11 73.9 67 55.2
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 9.0e-11 73.6 44 86.4
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 9.9e-10 70.1 126 37.3
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.9e-09 67.8 139 42.4
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 4.9e-09 67.8 62 56.5
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 6.0e-07 60.8 62 51.6
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 7.9e-07 60.5 45 55.6
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 7.9e-07 60.5 60 50.0
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 1.0e-06 60.1 311 25.1
COL.COLO4_08259 Corchorus olitorius HOM05D000149 ORTHO05D000076 1.3e-06 59.7 44 63.6
MBI19_g07393_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D004199 1.3e-06 59.7 39 61.5


User provided reference genes

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