Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G040600 Manihot esculenta HOM05D007756 ORTHO05D009403 1.0e-21 105.9 55 100.0
Gohir.D10G020250 Gossypium hirsutum HOM05D007756 ORTHO05D009403 2.1e-11 71.6 51 72.5
Gohir.D10G020400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 3.5e-11 70.9 51 72.5
Gohir.A05G164200 Gossypium hirsutum HOM05D007756 ORTHO05D009403 7.9e-11 69.7 50 70.0
Gorai.009G172100 Gossypium raimondii HOM05D007756 ORTHO05D009403 7.9e-11 69.7 50 70.0
Thecc.06G196200 Theobroma cacao HOM05D007756 ORTHO05D009403 1.3e-10 68.9 51 70.6
Gohir.A10G019400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 3.9e-10 67.4 51 68.6
Gohir.D05G167100 Gossypium hirsutum HOM05D007756 ORTHO05D009403 5.1e-10 67.0 50 68.0
Gohir.A10G019600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 8.7e-10 66.2 49 69.4
Potri.011G044800 Populus trichocarpa HOM05D007756 ORTHO05D009403 1.9e-09 65.1 49 71.4
Prupe.4G039100 Prunus persica HOM05D007756 ORTHO05D009403 2.5e-09 64.7 52 71.2
MELO3C007317.2 Cucumis melo HOM05D007756 ORTHO05D009403 4.3e-09 63.9 50 66.0
Manes.16G038800 Manihot esculenta HOM05D007756 ORTHO05D009403 4.3e-09 63.9 52 71.2
Hma1.2p1_0144F.1_g064960 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 1.6e-08 62.0 51 68.6
CiPaw.09G159600 Carya illinoinensis HOM05D007756 ORTHO05D009403 2.2e-08 61.6 50 68.0
Nn1g06699 Nelumbo nucifera HOM05D007756 ORTHO05D009403 2.2e-08 61.6 49 65.3
CiPaw.09G159700 Carya illinoinensis HOM05D007756 ORTHO05D009403 4.8e-08 60.5 50 66.0
TAR679G0001 Trochodendron aralioides HOM05D007756 ORTHO05D009403 4.8e-08 60.5 51 64.7
Cfa000371 Carpinus fangiana HOM05D007756 ORTHO05D009403 6.3e-08 60.1 51 68.6
Potri.004G036375 Populus trichocarpa HOM05D007756 ORTHO05D009403 6.3e-08 60.1 43 72.1
Hma1.2p1_0144F.1_g064970 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 1.4e-07 58.9 52 65.4
PGSC0003DMG400022449 Solanum tuberosum HOM05D007756 ORTHO05D009403 1.4e-07 58.9 48 66.7
PGSC0003DMG400022450 Solanum tuberosum HOM05D007756 ORTHO05D009403 1.4e-07 58.9 48 66.7
Ciclev10017282m.g Citrus clementina HOM05D007756 ORTHO05D009403 1.8e-07 58.5 55 63.6
Ciclev10017421m.g Citrus clementina HOM05D007756 ORTHO05D009403 1.8e-07 58.5 50 66.0
Gohir.D05G167000 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.8e-07 58.5 54 61.1
MD10G1301200 Malus domestica HOM05D007756 ORTHO05D009403 1.8e-07 58.5 47 68.1
Sed0004694 Sechium edule HOM05D007756 ORTHO05D009403 1.8e-07 58.5 50 60.0
ClCG01G022590 Citrullus lanatus HOM05D007756 ORTHO05D009403 2.4e-07 58.2 47 63.8
Cfa000372 Carpinus fangiana HOM05D007756 ORTHO05D009403 3.1e-07 57.8 50 68.0
Cc02_g12640 Coffea canephora HOM05D007756 ORTHO05D009403 3.1e-07 57.8 52 63.5
Solyc02g078870.1 Solanum lycopersicum HOM05D007756 ORTHO05D009403 4.1e-07 57.4 48 64.6
Manes.16G022400 Manihot esculenta HOM05D007756 ORTHO05D009403 6.9e-07 56.6 48 66.7
PGSC0003DMG400022448 Solanum tuberosum HOM05D007756 ORTHO05D009403 6.9e-07 56.6 52 63.5
COL.COLO4_31554 Corchorus olitorius HOM05D007756 ORTHO05D009403 9.0e-07 56.2 50 66.0
Hma1.2p1_0144F.1_g064980 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 9.0e-07 56.2 52 63.5
GSVIVG01005837001 Vitis vinifera HOM05D007756 ORTHO05D009403 1.2e-06 55.8 46 63.0
Gohir.A06G123802 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.5e-06 55.5 49 61.2
Gohir.D06G128600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.5e-06 55.5 49 61.2
Prupe.4G039200 Prunus persica HOM05D007756 ORTHO05D009403 2.0e-06 55.1 57 56.1
Cpa.g.sc27.103 Carica papaya HOM05D007756 ORTHO05D009403 2.6e-06 54.7 44 65.9
Nitab4.5_0003114g0110 Nicotiana tabacum HOM05D007756 ORTHO05D009403 2.6e-06 54.7 49 65.3
Cfa000373 Carpinus fangiana HOM05D007756 ORTHO05D009403 3.4e-06 54.3 50 66.0
CiPaw.10G120600 Carya illinoinensis HOM05D007756 ORTHO05D009403 3.4e-06 54.3 48 66.7
Solyc02g078890.1 Solanum lycopersicum HOM05D007756 ORTHO05D009403 3.4e-06 54.3 52 61.5
Sopen02g023700 Solanum pennellii HOM05D007756 ORTHO05D009403 3.4e-06 54.3 52 61.5
CSS0020554 Camellia sinensis var. sinensis HOM05D007756 ORTHO05D009403 4.5e-06 53.9 47 61.7
CSS0041901 Camellia sinensis var. sinensis HOM05D007756 ORTHO05D009403 4.5e-06 53.9 47 61.7
Nn1g03943 Nelumbo nucifera HOM05D007756 ORTHO05D009403 5.9e-06 53.5 48 58.3
Potri.004G036350 Populus trichocarpa HOM05D007756 ORTHO05D009403 7.7e-06 53.1 51 64.7
RcHm_v2.0_Chr5g0006771 Rosa chinensis HOM05D007756 ORTHO05D009403 7.7e-06 53.1 46 67.4
RcHm_v2.0_Chr5g0006781 Rosa chinensis HOM05D007756 ORTHO05D009403 7.7e-06 53.1 46 67.4


User provided reference genes

Program Settings