Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.6e-235 818.9 392 100.0
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 4.7e-182 641.3 387 78.8
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 6.1e-182 641.0 387 78.6
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 6.8e-181 637.5 387 78.3
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 1.5e-180 636.3 388 77.6
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 4.4e-180 634.8 366 81.1
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 5.9e-177 624.4 372 77.4
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 5.9e-177 624.4 384 76.3
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 3.8e-176 621.7 390 75.9
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 4.7e-174 614.8 371 77.6
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 1.4e-173 613.2 386 75.9
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 4.0e-173 611.7 383 76.5
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 3.4e-172 608.6 386 73.6
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 5.7e-172 607.8 389 74.8
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 1.7e-171 606.3 383 73.6
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 4.9e-171 604.7 386 74.6
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 2.4e-170 602.4 374 75.4
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.4e-170 602.4 383 73.6
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 4.1e-170 601.7 385 74.8
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 5.9e-169 597.8 388 72.9
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 2.3e-168 595.9 387 72.9
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 5.0e-168 594.7 383 73.1
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 5.0e-168 594.7 376 74.5
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 1.1e-167 593.6 375 74.7
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 2.5e-167 592.4 385 73.5
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 3.3e-167 592.0 373 74.3
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 3.3e-167 592.0 386 73.1
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 4.3e-167 591.7 372 73.9
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 2.1e-166 589.3 389 74.0
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.4e-165 586.6 384 72.1
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 5.2e-165 584.7 387 73.1
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 5.2e-165 584.7 387 72.4
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 1.5e-164 583.2 420 68.3
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 1.5e-164 583.2 397 70.8
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 2.6e-164 582.4 362 74.0
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 4.4e-164 581.6 382 72.3
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.3e-163 580.1 372 72.3
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 1.3e-163 580.1 371 71.7
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 1.7e-163 579.7 370 72.7
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 3.7e-163 578.6 371 71.4
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 6.4e-163 577.8 361 74.2
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 1.4e-162 576.6 371 72.0
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 1.9e-162 576.2 365 73.7
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 3.2e-162 575.5 359 74.7
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 4.1e-162 575.1 364 73.9
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 5.4e-162 574.7 372 71.8
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 7.0e-162 574.3 394 69.5
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 1.2e-161 573.5 394 69.5
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 2.0e-161 572.8 370 71.9
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 2.7e-161 572.4 360 73.3
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 3.5e-161 572.0 386 71.8
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 4.6e-161 571.6 372 71.5
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 4.6e-161 571.6 372 71.5
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 4.6e-161 571.6 370 71.4
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 7.8e-161 570.9 394 69.0
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.3e-160 570.1 385 71.7
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 2.3e-160 569.3 364 72.3
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 5.0e-160 568.2 389 68.6
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 2.5e-159 565.8 382 69.6
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 3.3e-159 565.5 376 70.5
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 7.3e-159 564.3 369 72.4
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.2e-158 563.5 376 70.2
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 2.1e-158 562.8 378 70.1
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.7e-158 561.6 382 70.7
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 6.2e-158 561.2 384 70.3
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 8.1e-158 560.8 382 68.3
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.8e-157 559.7 357 73.1
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 2.3e-157 559.3 383 69.7
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 8.9e-157 557.4 357 73.4
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 8.9e-157 557.4 322 81.7
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 9.8e-156 553.9 386 68.9
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.7e-155 553.1 421 65.1
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 6.4e-155 551.2 381 68.5
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.4e-154 550.1 367 70.6
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.2e-153 547.0 336 75.0
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.5e-153 545.4 401 67.3
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 1.3e-152 543.5 370 69.5
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 9.5e-151 537.3 369 69.1
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 3.1e-149 532.3 386 65.3
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 1.7e-147 526.6 374 66.3
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 8.4e-147 524.2 395 65.3
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 3.5e-145 518.8 382 66.8
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 5.1e-144 515.0 364 68.1
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 2.5e-143 512.7 365 68.2
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 2.8e-142 509.2 338 71.6
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 9.9e-140 500.7 367 64.9
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 2.4e-133 479.6 369 61.8
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 4.0e-133 478.8 385 62.6
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 4.0e-133 478.8 382 62.3
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 3.9e-128 462.2 324 67.3
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 5.1e-128 461.8 374 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 2.1e-126 456.4 355 61.7
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 8.1e-126 454.5 370 59.2
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 3.8e-123 445.7 286 74.8
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 7.4e-119 431.4 382 58.9
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 7.4e-119 431.4 283 72.1
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.8e-118 429.5 388 53.6
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 9.3e-114 414.5 284 71.5
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 2.8e-110 402.9 375 51.5
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 2.8e-110 402.9 428 52.3
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 1.4e-109 400.6 279 68.1
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.7e-107 393.7 374 50.8
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 5.9e-92 342.0 250 68.0
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.0e-91 341.3 245 69.0
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 5.5e-82 308.9 278 54.0
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 8.2e-78 295.0 353 44.8
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 3.1e-77 293.1 419 42.7
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.5e-74 282.3 157 80.9
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.5e-74 282.3 157 80.9
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.0e-72 278.1 362 42.8
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 1.4e-72 277.7 179 72.1
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 7.5e-71 271.9 296 48.3
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 3.4e-63 246.5 118 99.2
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.8e-62 243.4 136 80.9
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 2.2e-46 190.7 217 51.2
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 1.4e-45 188.0 119 70.6
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.4e-45 187.2 99 83.8
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 6.8e-40 169.1 115 70.4
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 5.8e-39 166.0 293 33.4
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 7.5e-39 165.6 90 77.8
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 1.1e-37 161.8 89 79.8
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 1.9e-34 151.0 87 79.3
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.2e-30 137.5 87 74.7
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 1.2e-28 131.7 80 70.0
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 6.0e-28 129.4 95 62.1
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 4.7e-25 119.8 229 37.1
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.2e-22 110.9 154 41.6
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 9.3e-21 105.5 123 48.8
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 2.5e-10 70.9 73 47.9
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 2.4e-08 64.3 130 33.1
SalBow2G2809 Salvia bowleyana HOM05D002999 ORTHO05D003137 9.9e-07 58.9 165 28.5


User provided reference genes

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