Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 0.0e+00 2625.9 1441 100.0
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 0.0e+00 1486.9 1401 61.8
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 0.0e+00 1435.6 1402 60.5
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 0.0e+00 1288.9 1499 54.2
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 0.0e+00 1287.7 1486 54.5
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 0.0e+00 1273.8 1544 53.1
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1243.0 1466 53.3
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1241.1 1466 53.2
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 0.0e+00 1239.6 1474 53.2
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1236.1 1453 52.9
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 0.0e+00 1235.3 1462 53.8
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1221.5 1512 51.7
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 0.0e+00 1220.7 1500 52.1
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 0.0e+00 1218.8 1484 54.0
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1216.4 1500 52.0
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1215.7 1501 52.1
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 0.0e+00 1194.5 1446 52.8
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1175.6 1452 51.4
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 0.0e+00 1120.1 1386 50.5
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 0.0e+00 1083.2 1450 50.2
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1080.1 1312 51.4
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 0.0e+00 1075.1 1443 49.1
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 2.2e-306 1056.2 1444 49.0
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.1e-300 1037.3 1482 47.4
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 4.1e-300 1035.4 1421 49.1
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.2e-286 990.7 1415 46.4
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.5e-286 990.3 1451 46.6
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.4e-284 983.8 1458 45.5
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 2.4e-284 983.0 1456 45.3
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 2.0e-283 979.9 1419 47.5
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 1.4e-279 967.2 1437 47.5
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 6.8e-279 964.9 1449 46.7
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.2e-277 959.9 1452 46.8
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 5.4e-276 955.3 1467 45.1
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 2.0e-275 953.4 1423 44.4
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.2e-270 937.6 1470 44.8
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.2e-268 929.5 1311 45.8
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 2.5e-265 919.8 1455 42.7
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.4e-263 914.1 1258 46.5
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.2e-262 911.0 1500 42.5
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 7.6e-262 908.3 1300 46.4
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.6e-259 900.6 1330 44.7
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 3.5e-259 899.4 1483 44.4
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 2.3e-258 896.7 1269 48.5
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 6.6e-258 895.2 1388 45.9
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 8.6e-258 894.8 1453 44.0
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 5.2e-255 885.6 1412 45.8
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.5e-251 872.8 987 53.4
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 5.3e-247 859.0 1304 46.1
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.9e-244 850.5 1449 41.8
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 5.4e-244 849.0 1437 42.2
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 6.7e-242 842.0 1244 46.7
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 4.3e-241 839.3 1448 42.5
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 3.7e-240 836.3 1447 42.1
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 6.9e-239 832.0 1440 42.7
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 3.2e-236 823.2 1223 46.4
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 3.0e-234 816.6 1436 41.0
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.5e-233 814.3 1297 45.4
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.9e-233 813.9 1207 46.2
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 8.4e-229 798.5 1275 44.2
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.3e-226 791.2 1447 40.8
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 5.1e-226 789.3 1233 44.9
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.3e-224 784.6 1250 43.0
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.3e-224 784.6 1470 41.2
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.2e-219 768.1 1434 40.5
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 2.5e-217 760.4 1268 44.2
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 7.4e-217 758.8 1239 42.5
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.5e-214 749.6 1278 42.4
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 7.2e-212 742.3 1347 39.5
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.8e-207 727.6 1348 40.5
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 5.3e-207 726.1 1274 42.1
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.5e-206 724.5 1249 42.2
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 2.7e-203 713.8 1381 40.1
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 3.6e-203 713.4 1475 36.9
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 2.3e-202 710.7 1437 39.6
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.1e-199 701.8 1408 40.5
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 2.4e-199 700.7 1445 39.7
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.2e-193 681.8 1392 38.6
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 5.7e-193 679.5 1248 40.6
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 4.2e-188 663.3 1397 38.7
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 1.0e-186 658.7 1417 38.2
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 3.0e-186 657.1 1410 39.4
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 3.0e-186 657.1 1249 40.8
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 8.8e-186 655.6 1448 36.5
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 1.8e-183 647.9 1418 38.4
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 4.2e-180 636.7 1376 37.7
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 3.6e-179 633.6 1408 37.0
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 3.6e-179 633.6 1408 37.0
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 4.7e-179 633.3 1371 37.6
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.7e-177 626.3 1193 41.2
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 3.7e-176 623.6 1267 38.0
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 5.0e-173 613.2 1412 35.9
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 2.3e-170 604.4 797 48.9
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.7e-168 598.2 1516 34.8
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.4e-161 573.9 1066 40.1
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.7e-160 571.6 1251 37.3
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 2.2e-160 571.2 668 57.2
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 2.9e-160 570.9 1256 37.7
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 2.8e-155 554.3 1134 38.3
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 4.9e-152 543.5 1224 36.4
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.3e-149 534.6 867 41.5
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 3.5e-142 510.8 669 47.5
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.2e-139 500.0 624 51.8
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 4.0e-130 470.7 626 52.9
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.8e-125 455.3 936 36.1
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 9.0e-122 443.0 897 37.2
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 4.8e-115 420.6 1254 31.9
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-102 377.1 486 52.1
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 7.4e-100 370.2 538 46.5
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.4e-98 365.9 479 46.3
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.2e-95 354.8 620 42.1
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 7.9e-94 350.1 466 46.1
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 5.3e-90 337.4 687 40.3
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.9e-80 305.1 310 54.8
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.1e-74 286.6 418 49.0
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 8.5e-72 276.9 774 32.6
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 4.4e-68 264.6 285 52.3
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-63 250.0 560 37.5
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 4.5e-57 228.0 363 39.9
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.9e-56 225.3 242 50.8
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 5.0e-56 224.6 614 32.2
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 8.6e-56 223.8 234 53.4
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 6.1e-54 217.6 519 33.9
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.8e-53 214.2 245 52.2
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 1.5e-52 213.0 681 33.6
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 7.5e-52 210.7 522 35.4
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.3e-51 209.9 524 33.6
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.0e-48 200.3 870 28.4
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 9.5e-47 193.7 162 57.4
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.2e-46 193.4 590 30.5
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 2.1e-41 176.0 560 31.6
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 3.9e-40 171.8 555 29.9
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.6e-38 166.4 483 31.1
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 2.3e-37 162.5 368 39.7
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 6.8e-37 161.0 309 48.5
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 8.9e-37 160.6 308 52.3
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 8.1e-22 110.9 660 25.6
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.6e-20 105.9 125 48.8
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.3e-16 93.6 542 27.3
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.8e-14 85.9 198 31.8
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.4e-13 82.8 63 60.3
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 1.5e-12 80.1 130 43.1
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.6e-12 79.3 62 71.0
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 5.4e-10 71.6 53 67.9
SHI02204 Sapria himalayana HOM05D002890 ORTHO05D005855 1.3e-08 67.0 193 32.1
RcHm_v2.0_Chr5g0003041 Rosa chinensis HOM05D002890 ORTHO05D005855 1.6e-06 60.1 81 54.3


User provided reference genes

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