Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 2494.5 1351 100.0
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1499.2 1515 56.4
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1494.2 1522 58.5
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1440.2 1529 57.7
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1397.9 1421 57.1
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1397.9 1437 60.5
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1365.1 1413 58.4
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1351.7 1532 52.4
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1339.7 1390 57.1
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1332.8 1375 56.1
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1332.4 1466 55.0
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1317.0 1428 55.7
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1316.6 1372 54.4
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1307.4 1532 51.7
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1298.5 1534 52.4
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1298.1 1477 54.0
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1284.2 1358 55.1
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1276.9 1344 57.7
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1271.1 1358 55.0
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1270.0 1384 56.4
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1259.2 1364 54.8
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1249.6 1555 48.6
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1246.9 1386 55.6
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1243.0 1407 54.8
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1240.7 1505 52.2
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1239.2 1456 54.4
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1238.8 1389 55.5
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1238.8 1484 53.5
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1232.2 1381 55.0
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1229.9 1504 51.9
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1229.5 1437 54.4
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1225.3 1365 55.3
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1219.9 1432 53.4
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1218.0 1400 56.4
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1212.6 1548 50.3
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1203.3 1357 53.6
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1200.3 1534 48.0
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1198.0 1401 54.0
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1194.9 1366 52.0
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1194.5 1387 50.6
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1191.0 1386 50.6
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1186.4 1380 52.5
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1184.9 1491 50.8
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1182.9 1384 52.0
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1173.7 1545 50.4
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1173.3 1492 51.1
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1171.4 1363 52.9
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1161.7 1385 53.9
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1154.4 1356 49.9
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1153.7 1380 49.9
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1151.7 1795 45.1
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1148.3 1353 50.6
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1148.3 1445 52.4
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1143.3 1431 51.8
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1140.9 1380 51.0
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1137.5 1351 53.1
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1136.3 1588 48.6
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1135.2 1558 48.1
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1133.2 1434 51.5
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1130.5 1353 52.0
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1123.6 1406 50.0
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1120.5 1362 51.6
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1119.8 1398 50.1
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1106.7 1464 47.9
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 1105.5 1483 46.8
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1103.2 1374 51.1
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1100.9 1521 48.1
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1094.7 1462 49.2
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1088.2 1371 51.8
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 0.0e+00 1086.2 1349 49.5
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 4.6e-311 1071.6 1472 49.1
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 1.1e-310 1070.5 1333 48.1
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 2.7e-309 1065.8 1397 47.2
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.7e-309 1065.8 1403 51.9
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 4.7e-306 1055.0 1496 45.7
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 3.5e-301 1038.9 1470 49.9
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 8.6e-300 1034.2 918 61.5
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.4e-294 1016.9 980 58.1
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 3.2e-294 1015.8 1423 46.1
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 5.4e-294 1015.0 1361 50.2
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 4.4e-288 995.3 1357 49.4
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 7.5e-288 994.6 1368 49.0
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 4.6e-285 985.3 1383 48.9
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 5.4e-278 961.8 1192 48.5
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 3.4e-272 942.6 1341 44.7
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 1.2e-269 934.1 1017 53.0
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.6e-266 922.5 767 65.7
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 3.5e-253 879.4 1422 45.6
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 2.3e-244 850.1 1294 43.0
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 2.2e-239 833.6 2347 31.1
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.4e-233 814.3 1133 46.2
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.3e-231 807.7 1296 43.0
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 3.2e-230 803.1 1369 44.6
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 2.4e-217 760.4 1351 37.0
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.5e-206 724.5 770 54.7
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 1.7e-186 657.9 892 48.4
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 1.3e-183 648.3 550 65.3
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.4e-179 633.6 1323 36.7
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 2.0e-176 624.4 1525 32.3
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 3.0e-167 594.0 667 49.6
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.4e-163 580.1 1175 40.3
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.9e-158 564.7 876 41.7
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.6e-144 518.5 1351 31.5
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 7.3e-142 509.6 430 66.5
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.5e-115 420.6 569 45.7
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.5e-110 405.6 1392 28.6
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.3e-109 402.5 437 61.1
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.2e-97 361.3 581 38.6
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.2e-96 359.4 500 41.2
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 6.1e-96 357.1 482 46.3
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 2.3e-95 355.1 1522 24.5
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 8.8e-95 353.2 307 62.2
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 3.5e-91 341.3 1457 27.1
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 6.7e-87 327.0 298 59.4
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 3.2e-81 308.1 298 57.0
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.8e-77 294.3 234 67.1
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-75 289.7 290 50.0
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 4.4e-70 271.2 223 65.0
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.9e-58 231.5 757 27.7
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 8.3e-53 213.8 151 72.2
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.0e-52 210.7 268 45.9
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 3.7e-45 188.3 444 43.2
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 3.2e-44 185.3 130 72.3
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 2.7e-43 182.2 161 60.9
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-42 180.3 704 27.0
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.6e-40 172.9 232 39.7
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 6.0e-35 154.5 154 57.8
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.7e-32 144.8 377 30.0
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 5.8e-30 137.9 506 25.9
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.6e-30 137.5 666 24.5
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.9e-25 122.9 101 59.4
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 2.6e-22 112.5 100 58.0
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 2.4e-20 105.9 74 67.6
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 5.4e-20 104.8 181 38.7
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 4.6e-19 101.7 356 27.5
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 9.0e-15 87.4 245 29.0
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.7e-13 83.2 101 54.5
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.1e-12 80.5 73 58.9
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 2.3e-10 72.8 71 54.9
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 4.8e-08 65.1 66 56.1
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 8.2e-08 64.3 52 63.5
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 3.4e-06 58.9 163 31.3


User provided reference genes

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