Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 2.6e-203 711.8 360 100.0
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 1.6e-157 559.7 360 77.8
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 8.5e-130 467.6 340 67.6
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 6.1e-128 461.5 338 67.8
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 3.0e-127 459.1 337 67.7
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 1.5e-126 456.8 339 65.8
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 1.7e-125 453.4 346 64.2
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 3.7e-125 452.2 350 66.9
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 7.0e-124 448.0 357 66.1
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 7.0e-124 448.0 357 66.1
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.3e-122 443.7 333 65.2
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 2.2e-122 443.0 343 64.7
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 5.0e-122 441.8 357 64.7
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 1.1e-121 440.7 352 63.1
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 1.5e-121 440.3 341 63.9
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 3.2e-121 439.1 337 64.7
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 5.5e-121 438.3 350 63.7
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 7.2e-121 438.0 339 64.9
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 1.2e-120 437.2 353 61.2
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 1.2e-120 437.2 338 64.5
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 2.7e-120 436.0 339 65.8
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 3.6e-120 435.6 338 64.5
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 4.7e-120 435.3 338 62.7
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 1.4e-119 433.7 318 66.4
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 1.8e-119 433.3 339 63.7
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.2e-119 431.8 351 62.4
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 1.5e-118 430.3 336 64.6
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 5.7e-118 428.3 334 63.2
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 9.8e-118 427.6 349 61.0
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.7e-117 426.8 348 62.4
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 2.2e-117 426.4 345 61.7
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 2.2e-117 426.4 339 61.4
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 4.9e-117 425.2 345 62.0
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 6.3e-117 424.9 337 62.9
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 8.3e-117 424.5 338 63.9
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 7.0e-116 421.4 349 60.7
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 9.1e-116 421.0 313 66.5
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.3e-114 417.2 316 65.5
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.7e-114 416.8 350 58.6
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 2.3e-114 416.4 347 60.2
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 2.9e-114 416.0 358 60.9
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.8e-114 415.6 350 58.3
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 8.6e-114 414.5 337 64.1
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.1e-113 414.1 350 58.3
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 7.2e-113 411.4 350 58.0
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.2e-112 410.6 333 62.2
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.6e-112 410.2 355 59.7
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.6e-112 410.2 350 56.6
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.1e-112 409.8 333 62.2
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 4.7e-112 408.7 349 59.3
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 6.1e-112 408.3 337 61.4
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.4e-111 407.1 351 57.5
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 4.0e-111 405.6 349 59.6
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 5.2e-111 405.2 351 57.3
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 6.8e-111 404.8 344 58.7
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 2.6e-110 402.9 347 58.8
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.6e-110 402.9 338 59.8
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 7.5e-110 401.4 335 61.8
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 1.7e-109 400.2 351 57.0
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 1.1e-108 397.5 343 58.0
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 2.4e-108 396.4 353 56.7
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 3.2e-108 396.0 350 56.0
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 3.2e-108 396.0 350 56.6
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 3.2e-108 396.0 350 56.6
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 7.0e-108 394.8 353 56.4
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 7.0e-108 394.8 353 56.4
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 1.6e-107 393.7 347 57.3
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 2.0e-107 393.3 352 56.2
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 2.0e-107 393.3 352 56.2
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 2.0e-107 393.3 352 56.2
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 5.9e-107 391.7 344 57.6
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 7.8e-107 391.3 345 60.6
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.3e-106 390.6 339 60.2
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 1.5e-105 387.1 345 58.6
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.9e-105 386.7 319 61.8
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 7.3e-105 384.8 334 59.0
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 2.8e-104 382.9 344 58.1
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 1.0e-103 380.9 345 57.1
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.2e-102 377.5 354 55.9
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.0e-102 376.7 341 56.0
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 2.0e-102 376.7 341 56.0
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 4.4e-102 375.6 337 56.4
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 9.8e-102 374.4 350 55.1
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 1.7e-101 373.6 317 58.4
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 3.7e-101 372.5 339 56.0
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 4.9e-101 372.1 320 58.4
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 6.4e-101 371.7 329 59.6
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.1e-100 370.9 337 55.8
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 1.4e-100 370.5 338 55.3
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.9e-100 370.2 341 54.5
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.4e-100 369.8 350 54.6
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 9.2e-100 367.9 357 54.1
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.0e-98 364.4 351 54.4
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 6.6e-98 361.7 350 53.4
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 1.9e-97 360.1 279 65.9
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 3.6e-96 355.9 349 54.4
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.7e-96 355.5 332 52.7
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 6.8e-95 351.7 332 51.8
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.2e-94 350.9 351 54.7
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 5.8e-94 348.6 337 54.3
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 7.5e-94 348.2 328 51.8
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 2.2e-93 346.7 339 51.0
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 3.7e-93 345.9 347 54.5
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.4e-92 343.2 340 54.7
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 5.4e-92 342.0 327 52.0
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.1e-92 341.7 342 51.2
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 1.2e-91 340.9 314 56.4
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 6.0e-91 338.6 256 63.7
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 1.7e-90 337.0 349 53.6
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.1e-89 334.3 342 51.5
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 4.3e-89 332.4 337 49.3
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 4.3e-89 332.4 272 59.2
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 2.8e-88 329.7 254 65.7
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.0e-87 325.9 284 58.5
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 4.0e-87 325.9 411 47.2
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.7e-85 319.3 339 50.4
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 6.4e-85 318.5 333 48.0
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 8.4e-85 318.2 339 48.1
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 1.9e-84 317.0 332 49.7
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.9e-84 317.0 348 48.6
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 3.2e-84 316.2 348 48.9
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 4.1e-84 315.8 337 47.8
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.2e-83 314.3 348 48.3
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.6e-83 313.9 339 50.4
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 2.1e-83 313.5 333 47.4
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 4.6e-83 312.4 332 47.6
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.8e-83 311.6 343 50.1
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.0e-82 311.2 333 47.1
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.0e-82 311.2 333 47.1
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 1.0e-82 311.2 314 53.8
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 1.7e-82 310.5 331 50.8
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 8.6e-82 308.1 307 51.5
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.5e-81 307.4 316 50.3
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 3.6e-80 302.8 352 48.0
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 4.0e-79 299.3 322 47.5
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 2.0e-78 297.0 351 45.3
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 7.6e-78 295.0 329 47.4
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.7e-77 293.9 337 45.4
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.9e-77 292.4 264 54.9
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 7.1e-76 288.5 334 46.1
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.0e-74 284.6 339 44.5
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.3e-74 283.5 342 46.5
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 3.3e-73 279.6 338 45.0
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 4.3e-73 279.3 275 52.7
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.1e-71 274.6 179 71.5
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 1.1e-68 264.6 271 52.4
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.2e-68 263.1 189 63.0
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 5.4e-68 262.3 222 57.2
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.1e-67 260.4 180 65.0
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 8.7e-66 255.0 189 63.0
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.4e-63 247.7 191 58.1
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 6.0e-59 232.3 190 57.4
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 1.5e-57 227.6 339 40.7
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.3e-56 224.6 181 56.9
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 2.2e-53 213.8 222 51.4
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.5e-51 206.5 182 54.9
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.1e-50 202.6 184 53.3
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 1.5e-49 201.1 344 37.8
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 4.8e-48 196.1 237 44.3
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 5.3e-47 192.6 227 47.6
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 2.0e-46 190.7 167 61.1
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 3.0e-42 176.8 325 34.8
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 3.3e-33 146.7 182 48.4
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 4.8e-32 142.9 172 42.4
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 3.4e-30 136.7 166 47.0
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 1.4e-28 131.3 104 61.5
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 4.7e-27 126.3 92 64.1
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 8.8e-26 122.1 90 58.9
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 4.4e-25 119.8 77 74.0
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 3.7e-24 116.7 95 61.1
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 2.9e-21 107.1 81 54.3
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 1.5e-20 104.8 80 57.5
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 6.1e-19 99.4 341 28.7
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 1.3e-16 91.7 75 60.0
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 7.0e-15 85.9 52 78.8
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.2e-14 85.1 85 47.1
SMO351G0034 Selaginella moellendorffii HOM05D003755 ORTHO05D376906 1.2e-14 85.1 327 24.2
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 3.8e-13 80.1 57 61.4
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 6.8e-10 69.3 49 63.3
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 6.8e-10 69.3 74 50.0
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 8.3e-08 62.4 68 47.1


User provided reference genes

Program Settings